View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_high_5 (Length: 549)
Name: NF17473_high_5
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 129 - 536
Target Start/End: Original strand, 4885135 - 4885542
Alignment:
| Q |
129 |
agccacttgttcaaggaggtgtcaattcattcaataataaaagtttgatattataatttgatgagacataatttaaatttcatcagtaacattactctat |
228 |
Q |
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| T |
4885135 |
agccacttgttcaaggaggtgtcaattcattcaataataaaagtttgatattataatttgatgagacataatttaaattccatcaataacattactctat |
4885234 |
T |
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| Q |
229 |
aactataaaatcaaaatgatttatcattgatccaacttggttgttatccattacccatattacccccatgattgtacaattgaagtttgttttcttttga |
328 |
Q |
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| T |
4885235 |
aactataaaatcaaaatgatttatcaatgatccaacttggttcttatccattacccatattacccccatgattgtacaattgaagtttgttttcttttga |
4885334 |
T |
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| Q |
329 |
aacaaatgaatagtacaaatttcaccttacattggccccacgtggcaccatcattaccacactaggctcttgacatgtcaatgtcacggtaccaccttcc |
428 |
Q |
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| T |
4885335 |
aacaaatgaatagtacaaatttcaccttacattggccccacgtggcaccatcattaccacactaggctcttgacatgtcaatgtcacggtaccaccttcc |
4885434 |
T |
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| Q |
429 |
atctattctctcttacctccgtgaccaaagtaaactccttttttctttcaaatctatcaacttggattgcattgtaattaacaacgaacactatattatt |
528 |
Q |
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| T |
4885435 |
atctattctctcttacctccgtgaccaaagtaaactccttttttctttcaaatctatcaacttggattgcattgtaattaacaacgaacactatattatt |
4885534 |
T |
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| Q |
529 |
attttgat |
536 |
Q |
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| T |
4885535 |
attttgat |
4885542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 4885025 - 4885074
Alignment:
| Q |
19 |
gtaatacaaactaatctttatcaaaatatctaatgagatgtaacttctct |
68 |
Q |
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| T |
4885025 |
gtaatagaaactaatctttatcaaaatatctaatgagatgtaacttctct |
4885074 |
T |
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