View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17473_high_6 (Length: 544)
Name: NF17473_high_6
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 34 - 534
Target Start/End: Complemental strand, 53589731 - 53589231
Alignment:
| Q |
34 |
taatacattaagcaaacaataaagacagatacagaggagttaagcaatttaatacaacagacagtatccaatcaataagaccacatgccaaacagacaaa |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53589731 |
taatacattaagcaaacaataaagacagatacagaggagttaaacaatttaatacaacagacagtatccaatcaataagaccacatgccaaacagacaaa |
53589632 |
T |
|
| Q |
134 |
gagggtgtggctaataacctatagtcacattattgagctgtttctgtcttgttgctaatgctttcttcaatcccctcttaattaggcatttccattcaat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53589631 |
gagggtgtggctaataacctatagtcacattattgagctgtgtctgtcttgttgctaatgctttcttcaatcccctcttaattaggcatttccattcaat |
53589532 |
T |
|
| Q |
234 |
aaggtctctctccatagtaattcccaggaggatcatagttacatgtcatgaaagtacctttatcatcagaacacacaacactagcacatccaacttttgt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53589531 |
aaggtctctctccatagtaattcccaggaggatcatagttacatgtcatgaaagtacctttatcatcagaacacacaacactagcacatccaacttttgt |
53589432 |
T |
|
| Q |
334 |
agtgctaccccaaacaacctgtgtataatgtccacacatttctccatcaacacaagagttgtgccaataattgtaaaactgtttctcatcaacccaagca |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53589431 |
agtgctaccccaaacaacctgtgtataatgtccacacatttctccatcaacacaagagttgtgccaataattgtaaaactgtttctcatcaacccaagca |
53589332 |
T |
|
| Q |
434 |
cttactgcttgtgctggattccacccaacaccactaccccagaaaatgttctcaccatatggaccattagaatgctccaaggcacagtcgttacgccttt |
533 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53589331 |
cttactgcctgtgctggattccatccaacaccactaccccagaaaatgttctcaccatatggaccattagaatgctccaaggcacagtcgttacgccttt |
53589232 |
T |
|
| Q |
534 |
g |
534 |
Q |
| |
|
| |
|
|
| T |
53589231 |
g |
53589231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University