View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17473_high_9 (Length: 505)
Name: NF17473_high_9
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_high_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 505
Target Start/End: Complemental strand, 30886286 - 30885793
Alignment:
| Q |
19 |
ataagtccacatctgtctagatgattgttattttcaatagacaatcttacaagttatttctgaaacttgatggaaatatacctaagcagaagaacgcact |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30886286 |
ataagtccacatctctctagatgattgttattttcaatagacaatcttacaagttatttcccaaacttgacggaaatatacctaagcagaagaacgcact |
30886187 |
T |
|
| Q |
119 |
ttttatgcaagcaatgaagacatcagcgacaaatgttagtttgtgctcataaacaaggcctaaaacagttcatgcaaaatattgaaacatgaatgtctgt |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30886186 |
ttctatgcaagcaatgaagacatcagcgacaaatgttagtttgtgctcataaacaaggcctaaaacagttcatgcaaaatattgaaacatgaatgtctct |
30886087 |
T |
|
| Q |
219 |
gtatgtagaaacacatagataatcacattcttttcacaaaatatctacttaaacttacttagatagttcccttacctccatcattccttcctctgtaact |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30886086 |
gtatgtagaaacacatagataatcacattcttttcacaaaatatctacttaaacttacttagatagttcccttacctccatcattccttcctctgtaact |
30885987 |
T |
|
| Q |
319 |
ttataacttaggggaatagatccttccaagagattaacggaaacaaaaatgaagtctaaaagcacgcttatagaaggaatgaatgagattcaaaaggatc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30885986 |
ttataacttaggggaatagatccttccaagagattaacggaaacaaaaatgaagtctaaaagcacgcttatagaaggaatgaatgagattcaaaaggatc |
30885887 |
T |
|
| Q |
419 |
tcaggtcataattaattttgaatgtaaatatagatattaattattaa-------tgaaaaatgaaggctgcattatactatcaaatcaaacccc |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30885886 |
tcaggtcataattaattttgaatgtaaatatagatattaattattaatgaataatgaaaaatgaaggttgcattatactatcaaatcaaacccc |
30885793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University