View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17473_low_10 (Length: 479)

Name: NF17473_low_10
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17473_low_10
NF17473_low_10
[»] chr6 (2 HSPs)
chr6 (13-426)||(32602171-32602573)
chr6 (13-426)||(32592024-32592431)
[»] chr1 (3 HSPs)
chr1 (231-323)||(35124833-35124925)
chr1 (235-323)||(34579652-34579740)
chr1 (69-154)||(34579503-34579588)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Original strand, 32602171 - 32602573
Alignment:
Q  13 aaaataaatagtaggtatagtagcagcaatgatcgttgtaggtgccacttgccacctacctaaattgatatacttgtaccctagggcagcaagtccagtt 112  Q
    |||||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32602171 aaaataaagagtaagtatggtagcagcaatgatcgttgtagttgccacttgccacctacctaaattgatatacttgtaccctagggcagcaagtccagtt 32602270  T
Q  113 gacaccatcgcatcagctgaaatgataaatcaatatagtttagttcaattgaattaaatatatttaaactgtaaaaataatagcttaattagggaacatc 212  Q
    |||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||         ||||||||    
T  32602271 gacaccattgcatcagctgaaatgataaatcaatattgtttacttcaattgaattaaatatatttaaactgtaaaaataatag---------ggaacatc 32602361  T
Q  213 ataataatgataataaaaatatatacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaacatcataaat 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32602362 ataataatgataataaacatatatacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaacatcataaat 32602461  T
Q  313 ataattgattaggaaactatatactttcatatgtatttaattggagaaaattatgtgtatttttatgtgagaaacataaaagaaaaaatggatatatttg 412  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  32602462 ataattgattaggaaactatatactttc--atgtatttaattggagaaaattatgtgcatttttatgtgagaatcataaaagaaaaaatggatatatttg 32602559  T
Q  413 aatgaaaaatggat 426  Q
    |||||| |||||||    
T  32602560 aatgaacaatggat 32602573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 426
Target Start/End: Original strand, 32592024 - 32592431
Alignment:
Q  13 aaaataaatagtaggtatagtagcagcaatgatcgttgtaggtgccacttgccacctacctaaattgatatacttgtaccctagggcagcaagtccagtt 112  Q
    |||||||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32592024 aaaataaagagtaagtatagcagcagcaatgatcgttgtagttgccacttgccacctacctaaattgatatacttgtatcctagggcagcaagtccagtt 32592123  T
Q  113 gacaccatcgcatcagctgaaatgataaatcaatatagtttagttcaattgaattaaatatatttaaactgtaaaaataatagcttaattagggaacatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| ||    ||||||||||||    
T  32592124 gacaccatcgcatcagctgaaatgataaatcaatatagtttagatcaattgaattacatatatctaaactgtaaaaataatggc----ttagggaacatc 32592219  T
Q  213 ataataatgataataaaaatatatacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaacatcataaat 312  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32592220 ataataatgataataaacatagatacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaaaatcataaat 32592319  T
Q  313 ataattgattaggaaactatatactttcatatgtatttaattggagaaaattatgtgtatttttatgtgagaaacataaaagaaaaaatggatatatttg 412  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||    
T  32592320 ataattgattaggaaactatgtactttc--atgtatttaattggagaaaattatgtgtatttttacgtgtgaatcataaaagaaaaaatggatatatttg 32592417  T
Q  413 aatgaaaaatggat 426  Q
    |||||| |||||||    
T  32592418 aatgaacaatggat 32592431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 231 - 323
Target Start/End: Original strand, 35124833 - 35124925
Alignment:
Q  231 atatatacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaacatcataaatataattgatta 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  35124833 atatatacctgtatctcggattaaactttcattaatatcacaaccgaaatggttccaactattccatctgaacatcatatgtataattgatta 35124925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 34579652 - 34579740
Alignment:
Q  235 atacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaacatcataaatataattgatta 323  Q
    |||||||| ||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||  ||||||||||||    
T  34579652 atacctgtgtcttggattaaactttcattgatatcacaaccaaaatggttccagctattccatctgatcatcatatgtataattgatta 34579740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 34579503 - 34579588
Alignment:
Q  69 tacctaaattgatatacttgtaccctagggcagcaagtccagttgacaccatcgcatcagctgaaatgataaatcaatatagttta 154  Q
    |||||||||| ||||| ||||||||||  |||||||| |||||||||||||| || || |||||||| |||||  |||| ||||||    
T  34579503 tacctaaattaatatatttgtaccctaaagcagcaaggccagttgacaccattgcgtcggctgaaataataaagtaataaagttta 34579588  T

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