View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_11 (Length: 463)
Name: NF17473_low_11
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 42307261 - 42307697
Alignment:
| Q |
18 |
gtaagtgcatatatattttagattgtaaaatcacacacacatgtatagcatgcaaggaataaaactcaagaacaaatgtttcactctacctcggtaaatt |
117 |
Q |
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| T |
42307261 |
gtaagtgcatacatattttagattgtaaaatcacacacacatgtatagcatgcaaggaataaaactcaagaacaaatgtttcactctacctcggtaaatt |
42307360 |
T |
|
| Q |
118 |
gtagtaaatgaagagccaatgtacactcatctttatgatcgagcaccaaactcccattctgtcacaagttggtaaacaagatatgaagcatgtaaatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307361 |
gtagtaaatgaagagccaatgtacactcatctttatgatcgagcaccaaactcccattctgtcacaagttggtaaacaagatatgaagcatgtaaatttg |
42307460 |
T |
|
| Q |
218 |
caccagttataaacacaaatgcagtattgaatcatatcacaatcacaatagatgactgcttaactgactaatatttaaccatgatatactctagtataaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307461 |
caccagttataaacacaaatgcagtattgaatcatatcacaatcacaatagatgactgcttaactgactaatatttaaccatgatatactctagtataaa |
42307560 |
T |
|
| Q |
318 |
acctatacacaattcatatatatgtttaacattgtaaaattaagcatatgatgcaaaaaggaattaaattacttttttcaacaaatctaatgtcatcatc |
417 |
Q |
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| T |
42307561 |
acctatacacaattcatatatatgtttaacattgtaaaattatgcatatgatgcaaaaaggaattaaattacttttttcaacaaatctaatgtcatcatc |
42307660 |
T |
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| Q |
418 |
atggaaattagaaaaacttaccttttttagttcttct |
454 |
Q |
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| T |
42307661 |
atggaaattagaaaaacttaccttttttagttcttct |
42307697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 51571027 - 51570874
Alignment:
| Q |
60 |
gtatagcatgcaaggaataaaactcaagaacaaatgtttcactctacctcggtaaattgtagtaaatgaagagccaatgtacactcatctttatgatcga |
159 |
Q |
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||||| ||||||| ||| ||| |||| ||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||| |||| ||| || | |
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| T |
51571027 |
gtataacatgcaatgaacaaatctcatgaaaaaatgtttcactttacctcagtaaattgtagtaaatgaagacccaatgtacgctcgtcttcatgctcca |
51570928 |
T |
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| Q |
160 |
gcaccaaactcccattctgtcacaagttggtaaacaagatatgaagcatgtaaa |
213 |
Q |
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| T |
51570927 |
acaccaaattaccattctgtcacgagttggtaaacaagatatgaagcatataaa |
51570874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 454
Target Start/End: Complemental strand, 51570711 - 51570631
Alignment:
| Q |
371 |
caaaaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaacttaccttttttagttcttct |
454 |
Q |
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| T |
51570711 |
caaaaagcaattaaattaacttttccaataattctaatgtcatca-ca--gaaattagaaaagcttaccttttttagttcttct |
51570631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 350
Target Start/End: Original strand, 47972050 - 47972293
Alignment:
| Q |
104 |
tacctcggtaaattgtagtaaatgaagagccaatgtacactcatctttatgatcgagcaccaaactcccattctgtcacaagttggtaaacaagatatga |
203 |
Q |
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|||||| |||||||| |||||||||||| ||||||||| |||||||| ||| || | ||||||| ||||| |||||||| | |||||||||||||||||| |
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| T |
47972050 |
tacctcagtaaattgaagtaaatgaagacccaatgtacgctcatcttcatgctccaacaccaaattcccagtctgtcacgaattggtaaacaagatatga |
47972149 |
T |
|
| Q |
204 |
agcatgtaaatttgcaccagttataaacacaaatgcagtattgaatcatatcacaatcacaatagatgactgcttaactgactaat--atttaaccatga |
301 |
Q |
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||| | | | | || || |||||||||||||| | || ||| |||||| ||||||| |||| |||| ||||||| ||||| || | | |||||||| |
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| T |
47972150 |
agcttaatattatacaaaag-tataaacacaaatgaattaatgagtcatattacaatcataatatatgagtgcttaattgactcatcaagtcaaccatga |
47972248 |
T |
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| Q |
302 |
tatactctagtataaaacctatacacaattcatatatatgtttaacatt |
350 |
Q |
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| T |
47972249 |
tctactc----ataaaacctaggcataatacatgtatatgtttaacatt |
47972293 |
T |
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