View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_14 (Length: 425)
Name: NF17473_low_14
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 24497034 - 24496941
Alignment:
| Q |
178 |
ttaatgtcactctttatgtttctgccttgcaatgaattatggtgatattatatgaattttttgttatgttgatctgtatttgataactattgaa |
271 |
Q |
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| T |
24497034 |
ttaatgtcactctttatgtttctgccttgcaatgaattatggtgatattatatgtattttttgttatgttgatctgtatttgataactattgaa |
24496941 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 364
Target Start/End: Original strand, 24496902 - 24496937
Alignment:
| Q |
329 |
tgagaaactagaaattgagaattcaattcaatgcca |
364 |
Q |
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| T |
24496902 |
tgagaaactagaaattgagaattcaattcaatgcca |
24496937 |
T |
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