View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_15 (Length: 423)
Name: NF17473_low_15
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 913372 - 913762
Alignment:
| Q |
18 |
atggttgaatctatttagtaatgataaagactc---ggtaccggtaattgtgtagttaatgagtaatgacactgtctctttattgtattaggttatgtaa |
114 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
913372 |
atggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgtagttaatgagtaatgacactgtctttttactgtattaggttatgtaa |
913471 |
T |
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| Q |
115 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
214 |
Q |
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| T |
913472 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
913571 |
T |
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| Q |
215 |
ttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttaca |
314 |
Q |
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| T |
913572 |
ttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttaca |
913671 |
T |
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| Q |
315 |
aaatgatatgaaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgttttgtccaatctgaagttcatgttatt |
407 |
Q |
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| T |
913672 |
aaatg--attcaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgttttgtccaatctgaagttcatgttatt |
913762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 889044 - 888681
Alignment:
| Q |
18 |
atggttgaatctatttagtaatgataaagactc---ggtaccggtaattgtgtagttaatgagtaatgacactgtctctttattgtattaggttatgtaa |
114 |
Q |
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| T |
889044 |
atggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgtagttaatgagtaatgacactgtctttttactgtattaggttatgtaa |
888945 |
T |
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| Q |
115 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
214 |
Q |
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| T |
888944 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
888845 |
T |
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| Q |
215 |
ttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
888844 |
ttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttaca |
888745 |
T |
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| Q |
315 |
aaatgatatgaaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgt |
380 |
Q |
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| T |
888744 |
aaatg--attcaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgt |
888681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 1002602 - 1002690
Alignment:
| Q |
291 |
gttgaatttgctttagtgtttacaaaatgatatgaaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgt |
380 |
Q |
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| T |
1002602 |
gttgaatttgctttagtgtttgcaaaatgatgtgaaaataaatctgtgaaatgaggatcctgagaaggt-aaatgtttggaaattcttgt |
1002690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 1002403 - 1002496
Alignment:
| Q |
202 |
atgaagtgtttgtttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttgcatttatctcaccgtgcgttga |
295 |
Q |
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| T |
1002403 |
atgaagtgcttgtttggtttcttatattataacggtagtaactcgcgtccaatctgatgatcatgttatttgctttcatctcaccgtgcattga |
1002496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 1002155 - 1002189
Alignment:
| Q |
49 |
tcggtaccggtaattgtgtagttaatgagtaatga |
83 |
Q |
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| T |
1002155 |
tcggtaccggtaattgtgtagttaatgagtaatga |
1002189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 913739 - 913786
Alignment:
| Q |
248 |
gtccaatatgaagaacatgttatttgcatttatctcaccgtgcgttga |
295 |
Q |
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| T |
913739 |
gtccaatctgaagttcatgttattcgcatttatctcaccgtgcgttga |
913786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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