View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_16 (Length: 411)
Name: NF17473_low_16
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 21 - 400
Target Start/End: Original strand, 3208000 - 3208379
Alignment:
| Q |
21 |
cccgcaagaatgttcaatccaggcccaagtatgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaacttgagggg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208000 |
cccgcaagaatgttcaatccaggcccaagtatgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaacttgagggg |
3208099 |
T |
|
| Q |
121 |
cattgggatttccaatgacagttcctttgaataaaattgtggccattggtgtggaagttgaatttatataatcttggatgtttaaaccagcagagtaact |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208100 |
cattgggatttccaatgacagttcctttgaataaaattgtggccattggtgtggaagttgaatttatataatcttggatgtttaaaccagcagagtaact |
3208199 |
T |
|
| Q |
221 |
tacatgcacagcaggtagaacatgaacatcagcaattggattgaaatcttcaccttcactgttcaaaagtatcatagcagcaccaccggcatctttaact |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208200 |
tacatgcacagcaggtagaacatgaacatcagcaattggattgaaatcttcaccttcactgttcaaaagtatcatagcagcaccaccggcatctttaact |
3208299 |
T |
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| Q |
321 |
gcttgacctttggctactcttccaacaaacccaccttgctcacacacaactatttttcccttaacatcaaccttcttcat |
400 |
Q |
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| T |
3208300 |
gcttgacctttggctactcttccaacaaacccaccttgctcacacacaactatttttcccttaacatcaaccttcttcat |
3208379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 27 - 396
Target Start/End: Original strand, 3202032 - 3202401
Alignment:
| Q |
27 |
agaatgttcaatccaggcccaagtatgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaacttgaggggcattgg |
126 |
Q |
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| T |
3202032 |
agaatgttcaatccaggtccaattatgtctggtttcagaattccagggcttgttttgcttggacctcttgatgaaaatgaagcaacttgaggggaaagtg |
3202131 |
T |
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| Q |
127 |
gatttccaatgacagttcctttgaataaaattgtggccattggtgtggaagttgaatttatataatcttggatgtttaaaccagcagagtaacttacatg |
226 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
3202132 |
gatttccaataacagttcctttgaataaaattgtggccattggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacatg |
3202231 |
T |
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| Q |
227 |
cacagcaggtagaacatgaacatcagcaattggattgaaatcttcaccttcactgttcaaaagtatcatagcagcaccaccggcatctttaactgcttga |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3202232 |
cacagcaggtagaacatgaacatcagcaattggattgaaagcttcatcttcaccattcaaaagtatcatagcagcaccaccagcatctttaactgcttga |
3202331 |
T |
|
| Q |
327 |
cctttggctactcttccaacaaacccaccttgctcacacacaactatttttcccttaacatcaaccttct |
396 |
Q |
| |
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||||||||||||||| |||| | ||| ||||||||||||| |||| ||||||||||||||||| |||| |
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| T |
3202332 |
cctttggctactctttcaaccgatccatcttgctcacacactactacctttcccttaacatcaacattct |
3202401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 400
Target Start/End: Original strand, 3215942 - 3216318
Alignment:
| Q |
27 |
agaatgttcaatccaggcccaagtatgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaacttgaggggcattgg |
126 |
Q |
| |
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|||||||||| |||||| |||| ||||||||||||||||||||| |||||| ||| | |||| |||||||||||||| |||| |||||||||||||||| |
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| T |
3215942 |
agaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaaaagtaagctacttgaggggcattgg |
3216041 |
T |
|
| Q |
127 |
gatttccaatgacagttcctttgaataaaattgtggccattggtgtggaagttgaatttatataatcttggatgtttaaaccagcagagtaacttacatg |
226 |
Q |
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|||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||| | |
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| T |
3216042 |
gatttccaataacagttccattgaataaaatcgtggccattggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacaag |
3216141 |
T |
|
| Q |
227 |
cacagcaggtaga---acatgaacatcagcaattggattgaaatcttcaccttcactgttcaaaagtatcatagcagcaccaccggcatctttaactgct |
323 |
Q |
| |
|
||||||||||| | |||||||| | |||||| ||| ||| | || ||| |||| || ||||| |||| ||||| || |||||||||||| |
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| T |
3216142 |
tgcagcaggtagattgtcttgaacatcggattttggatcaaaaccttgaagtttactattcatgaggatcatggcagatccaccagcgtctttaactgct |
3216241 |
T |
|
| Q |
324 |
tgacctttggctactcttccaacaaacccaccttgctcacacacaactatttttcccttaacatcaaccttcttcat |
400 |
Q |
| |
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||| |||| ||| || | ||||| ||||||| |||||||| ||||| |||||||||||||||| |||||||| |
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| T |
3216242 |
tgagctttcgctgcttgtgaaacaagtccaccttcctcacacaaaactacctttcccttaacatcaatgttcttcat |
3216318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 3220886 - 3220947
Alignment:
| Q |
51 |
atgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaac |
112 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||| |||||| |||||||| ||||||||| |||| |
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| T |
3220886 |
atgtctggtttaagaattccaggactttcttggcttggtcctcttgaagaaaatgaaacaac |
3220947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 3178922 - 3178861
Alignment:
| Q |
51 |
atgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaac |
112 |
Q |
| |
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||||||||||| ||||||||||| ||| || |||||| |||||||| ||||||||| |||| |
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| T |
3178922 |
atgtctggtttaagaattccaggactttgttggcttggtcctcttgaagaaaatgaaacaac |
3178861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 3231119 - 3231180
Alignment:
| Q |
51 |
atgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaac |
112 |
Q |
| |
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||||||||||| |||||||| || ||| ||| |||||| |||||||| ||||||||| |||| |
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| T |
3231119 |
atgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaatgaaacaac |
3231180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 3239918 - 3239979
Alignment:
| Q |
51 |
atgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaac |
112 |
Q |
| |
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||||||||||| ||||||||||| ||| || |||||| |||||||| ||||||||| |||| |
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| T |
3239918 |
atgtctggtttaagaattccaggactttgttggcttggtcctcttgaagaaaatgaaacaac |
3239979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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