View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17473_low_17 (Length: 410)
Name: NF17473_low_17
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Complemental strand, 52797850 - 52797467
Alignment:
| Q |
13 |
tagggccagtggaagcacacgcgaggcaagcggcaatgccgggcacattctccgacccgaaccaaaaggtatatactcaaaatggtgtcctttgtaatct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52797850 |
tagggccagtggaagcacacgcgaggcaagcggcaatgccgggcacattcttcgacccgaaccaaaaggtatatactcaaaatggtgtcctttgtaatct |
52797751 |
T |
|
| Q |
113 |
accatgtttggctgcataaacctttctggccagaacaataagggagcatcccacacttttggatccctcccaattgcccaaacattcactaaaatttgtg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52797750 |
accatgtttggctgcataaacctttctggccagaacaataagggagcatcccacacttttggatccctcccaattgcccaaacattcactaaaatttgtg |
52797651 |
T |
|
| Q |
213 |
tctcttttggaatgaagtagtctccaatcatgcaagagtccatggccatgtgaggaaccaaaaaaggaagaggtgggtggagtctcaacgtctccttgat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
52797650 |
tctcttttggaatgaagtagtctccaatcatgcaagagtccatggccatgtgaggaaccaaaaaaggaagaggtgggtgaagtctcaacgtctccttgat |
52797551 |
T |
|
| Q |
313 |
aactgctttgaggtatggaagactctctatgtccttttcttccattttcctatcagagcttattttgctccttagttccatttg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52797550 |
aactgctttgaggtatggaagactctctatgtccttttcttccattttcctatcagagcttattttgctccttagttccatttg |
52797467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University