View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17473_low_20 (Length: 391)

Name: NF17473_low_20
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17473_low_20
NF17473_low_20
[»] chr7 (8 HSPs)
chr7 (9-381)||(5289829-5290237)
chr7 (9-381)||(5302078-5302486)
chr7 (7-381)||(5283890-5284300)
chr7 (9-163)||(5314947-5315101)
chr7 (184-381)||(5314532-5314746)
chr7 (7-182)||(5310215-5310389)
chr7 (182-381)||(5309715-5309934)
chr7 (9-114)||(46707120-46707225)
[»] chr5 (13 HSPs)
chr5 (9-120)||(1477878-1477989)
chr5 (9-123)||(1482069-1482183)
chr5 (276-381)||(1491617-1491722)
chr5 (278-381)||(1481727-1481830)
chr5 (9-114)||(1504862-1504967)
chr5 (9-115)||(1492052-1492158)
chr5 (278-375)||(1504387-1504484)
chr5 (278-378)||(1477619-1477719)
chr5 (298-381)||(1496827-1496910)
chr5 (9-113)||(1509009-1509114)
chr5 (296-378)||(1485466-1485548)
chr5 (45-123)||(1486546-1486624)
chr5 (239-276)||(1504503-1504540)
[»] chr1 (9 HSPs)
chr1 (9-114)||(44128459-44128564)
chr1 (9-114)||(44132664-44132769)
chr1 (9-114)||(44141086-44141191)
chr1 (276-381)||(44128195-44128300)
chr1 (276-381)||(44132400-44132505)
chr1 (276-381)||(44140822-44140927)
chr1 (239-276)||(44128317-44128354)
chr1 (239-276)||(44132522-44132559)
chr1 (239-276)||(44140944-44140981)
[»] chr2 (2 HSPs)
chr2 (288-381)||(24165499-24165592)
chr2 (45-132)||(24163958-24164045)
[»] chr3 (2 HSPs)
chr3 (7-113)||(37859494-37859600)
chr3 (7-113)||(37863520-37863626)
[»] chr8 (1 HSPs)
chr8 (7-83)||(35250727-35250803)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 5289829 - 5290237
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5289829 gcatccaatgaaggggccatgtattcacaaacacttggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 5289928  T
Q  109 ctgaagtagttataatggaatgacattagcgcatcagtttttgggtaatatataccaaaaccaatcacacaat-------------------gtaaagta 189  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||                   | ||||||    
T  5289929 ctgaagtagttataatggaatgacattagcacatcagtttttgggtaatatataccaaaaccaatcacataatgaccaagataaatgtaaacgaaaagta 5290028  T
Q  190 tctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaaaaatacttacacatgcgctgaaatttctctttgag-------------- 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||                  
T  5290029 tctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgtt 5290128  T
Q  276 ---tatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttc 372  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5290129 cactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttc 5290228  T
Q  373 tgccctttg 381  Q
    |||||||||    
T  5290229 tgccctttg 5290237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 381
Target Start/End: Complemental strand, 5302486 - 5302078
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5302486 gcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 5302387  T
Q  109 ctgaagtagttataatggaatgacattagcgcatcagtttttgggtaatatataccaaaaccaatcacacaat-------------------gtaaagta 189  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||                   | ||||||    
T  5302386 ctgaagtagttataatggaatgacattagcacatcagtttttgggtaatatataccaaaaccaatcacataatgaccaagataaatgtaaacgaaaagta 5302287  T
Q  190 tctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaaaaatacttacacatgcgctgaaatttctctttgag-------------- 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||                  
T  5302286 tctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgtt 5302187  T
Q  276 ---tatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttc 372  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5302186 cactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttc 5302087  T
Q  373 tgccctttg 381  Q
    |||||||||    
T  5302086 tgccctttg 5302078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 381
Target Start/End: Complemental strand, 5284300 - 5283890
Alignment:
Q  7 ttgcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatc 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5284300 ttgcatccaatgaaggggccatgtattcacaaacactaggattttttttcaaaatttcttctgttagatacatgtatctcctcttgatcatagatttatc 5284201  T
Q  107 acctgaagtagttataatggaatgacattagcgcatcagtttttgggtaatatataccaaaaccaatcacacaat-------------------gtaaag 187  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||| |||||||||||||||||||||| |||                   | ||||    
T  5284200 acctgaagtagttataataaaatgacattagcacatcagtttttgggtgatatataccaaaaccaatcacataatgatcaagataaatataaacgaaaag 5284101  T
Q  188 tatctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaaaaatacttacacatgcgctgaaatttctctttgag------------ 275  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||                
T  5284100 tatctaataatatttatatactcaagtatatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctctttaagttcagttttgtg 5284001  T
Q  276 -----tatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggacct 370  Q
         | ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||    
T  5284000 ttcactgtttgtgattttaaagtaaaaatcaggatacgtgctttgttcaacacaatttgctggatttgcagtcccaatggccaagatggttgcagggcct 5283901  T
Q  371 tctgccctttg 381  Q
    |||||||||||    
T  5283900 tctgccctttg 5283890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 5315101 - 5314947
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5315101 gcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatagatttatcac 5315002  T
Q  109 ctgaagtagttataatggaatgacattagcgcatcagtttttgggtaatatatac 163  Q
    ||||||||||||||||| |||| ||||||| ||||| |||||| |||||||||||    
T  5315001 ctgaagtagttataatgaaatggcattagcacatcaatttttgtgtaatatatac 5314947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 184 - 381
Target Start/End: Complemental strand, 5314746 - 5314532
Alignment:
Q  184 aaagtatctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaaaaatacttacacatgcgctgaaatttctctttgag-------- 275  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||            
T  5314746 aaagtatctaaaaatatttatatactcaagtatatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctctttgagttcaactt 5314647  T
Q  276 ---------tatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcagg 366  Q
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| || || ||||||||    
T  5314646 tgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatggttgcagg 5314547  T
Q  367 accttctgccctttg 381  Q
    ||||||||| |||||    
T  5314546 accttctgctctttg 5314532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 5310389 - 5310215
Alignment:
Q  7 ttgcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatc 106  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||    
T  5310389 ttgcatccaatgaaggtgccatgtattcacaaacactaggattttctttcaaaatctcctctgttagatacatgtatctcctcttgatcatagatttatc 5310290  T
Q  107 acctgaagtagttataatggaatgacattagcgcatcagtttttgggtaatatataccaaaaccaatcacacaatg 182  Q
    ||||||||| ||||||||| |||||||||||| ||| | ||||||||||||  ||| |||||||||||||| ||||    
T  5310289 acctgaagtggttataatgaaatgacattagcacattaatttttgggtaattaata-caaaaccaatcacataatg 5310215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 182 - 381
Target Start/End: Complemental strand, 5309934 - 5309715
Alignment:
Q  182 gtaaagtatctaaaaatatttttatactcaagtttatcaaaataataa---atagaggagaaaaatacttacacatgcgctgaaatttctctttgagt-- 276  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||| |||||||||||||||||||||||||||| || |||      
T  5309934 gtaaagtatctaaaaatatttttatactcaagtatatcaaaataataataaatagaggagaagaatacttacacatgcgctgaaatttctccttaagttc 5309835  T
Q  277 ---------------atttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagtt 361  Q
                   |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| || ||||||    
T  5309834 agttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatagtt 5309735  T
Q  362 gcaggaccttctgccctttg 381  Q
    |||||||||||||| |||||    
T  5309734 gcaggaccttctgctctttg 5309715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 46707120 - 46707225
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 108  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| || | |||||| ||||||||||||||||||||||| ||||||||||    
T  46707120 gcatccaatgaaggtgccatatattcacaaacactgggattctctttcaaaatctcctatgttaggtacatgtatctcctcttgatcatagatttatcac 46707219  T
Q  109 ctgaag 114  Q
    ||||||    
T  46707220 ctgaag 46707225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 1477989 - 1477878
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 108  Q
    ||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  1477989 gcatccaatgacggtgccatgtattcacatacacttggattttctttcaaaatttcttcggtaagatacatgtatctcctcttgatcatggatttatcac 1477890  T
Q  109 ctgaagtagtta 120  Q
    ||||||||||||    
T  1477889 ctgaagtagtta 1477878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 1482183 - 1482069
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 108  Q
    |||||||||||||| ||||||||||| || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||    
T  1482183 gcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttcagtaagatacatgtatctcctcttgatcatagatttatcac 1482084  T
Q  109 ctgaagtagttataa 123  Q
    |||||||||||||||    
T  1482083 ctgaagtagttataa 1482069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 276 - 381
Target Start/End: Complemental strand, 1491722 - 1491617
Alignment:
Q  276 tatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttctgc 375  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| || || |||||||||||||||||    
T  1491722 tatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacagtttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgc 1491623  T
Q  376 cctttg 381  Q
    ||||||    
T  1491622 cctttg 1491617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 278 - 381
Target Start/End: Complemental strand, 1481830 - 1481727
Alignment:
Q  278 tttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttctgccc 377  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| || || |||||||||||||||||||    
T  1481830 tttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacagtttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccc 1481731  T
Q  378 tttg 381  Q
    ||||    
T  1481730 tttg 1481727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 1504967 - 1504862
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 108  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||| ||||| ||||||||||    
T  1504967 gcatccaatgaaggtgccatgtattcacaaacactgggattctcttttaaaatctcctctgttaggtacatgtatcttctcttaatcatagatttatcac 1504868  T
Q  109 ctgaag 114  Q
    ||||||    
T  1504867 ctgaag 1504862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 1492158 - 1492052
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 108  Q
    |||||||||||||| |||||||||||||||||| | ||||| ||||| ||||| || |||||||||||||||||||| || |||||||||||||| ||||    
T  1492158 gcatccaatgaaggtgccatgtattcacaaacattaggattctcttttaaaatctcctctgttagatacatgtatcttcttttgatcatggatttgtcac 1492059  T
Q  109 ctgaagt 115  Q
    |||||||    
T  1492058 ctgaagt 1492052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 375
Target Start/End: Complemental strand, 1504484 - 1504387
Alignment:
Q  278 tttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttctgc 375  Q
    ||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||| || || |||||||||||||||||    
T  1504484 tttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatttggtggatttgcagtgccaatggccaaaatggttgcaggaccttctgc 1504387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 1477719 - 1477619
Alignment:
Q  278 tttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttctgccc 377  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||| | ||| || ||||| ||||||||||    
T  1477719 tttgtgattttgaagtaaaaatcaggatatgtgctttgttcaacacagttggctggatttgcagtgccaatggccatgatggtggcagggccttctgccc 1477620  T
Q  378 t 378  Q
    |    
T  1477619 t 1477619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 298 - 381
Target Start/End: Complemental strand, 1496910 - 1496827
Alignment:
Q  298 atcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttg 381  Q
    ||||||||| ||||||||||||| ||||||||  ||||||||||||||||| ||||||||||||| ||| ||||||||||||||    
T  1496910 atcaggatatgtgctttgttcaatacaatttgttggatttgcagtgccaatagctaagatagttgtagggccttctgccctttg 1496827  T

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Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 1509114 - 1509009
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctctt-gatcatggatttatca 107  Q
    ||||||||||| || ||| | ||  |||||||| ||||||| ||||||||||| |||||||| | |||||||||||||||||| |||||| |||||||||    
T  1509114 gcatccaatgatggtgccgtataagcacaaacattgggattctctttcaaaatctcttctgtaatatacatgtatctcctcttagatcatcgatttatca 1509015  T
Q  108 cctgaa 113  Q
    ||||||    
T  1509014 cctgaa 1509009  T

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Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 1485548 - 1485466
Alignment:
Q  296 aaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttctgccct 378  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||| || ||||| |||||  ||||||| |||||||||||    
T  1485548 aaatcaggatatgtgctttgttcaacacaatttggtggatttgcagttcctatggccaagatgattgcagggccttctgccct 1485466  T

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Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 1486624 - 1486546
Alignment:
Q  45 ggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcacctgaagtagttataa 123  Q
    ||||| |||||||||||  |||||||| | ||||||||||| ||||||||||| ||||| |||||| ||||| ||||||    
T  1486624 ggattctctttcaaaatagcttctgtttggtacatgtatcttctcttgatcattgatttttcacctaaagtaattataa 1486546  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 1504540 - 1504503
Alignment:
Q  239 aaaaatacttacacatgcgctgaaatttctctttgagt 276  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  1504540 aaaaacacttacacatgcgttgaaatttctctttgagt 1504503  T

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Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 44128564 - 44128459
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 108  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||    
T  44128564 gcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcac 44128465  T
Q  109 ctgaag 114  Q
    ||||||    
T  44128464 ctgaag 44128459  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 44132769 - 44132664
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 108  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||    
T  44132769 gcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcac 44132670  T
Q  109 ctgaag 114  Q
    ||||||    
T  44132669 ctgaag 44132664  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 44141191 - 44141086
Alignment:
Q  9 gcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 108  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||    
T  44141191 gcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcac 44141092  T
Q  109 ctgaag 114  Q
    ||||||    
T  44141091 ctgaag 44141086  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 276 - 381
Target Start/End: Complemental strand, 44128300 - 44128195
Alignment:
Q  276 tatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttctgc 375  Q
    ||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||||||||| || |||||||| ||||||||    
T  44128300 tatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgc 44128201  T
Q  376 cctttg 381  Q
    ||||||    
T  44128200 cctttg 44128195  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 276 - 381
Target Start/End: Complemental strand, 44132505 - 44132400
Alignment:
Q  276 tatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttctgc 375  Q
    ||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||||||||| || |||||||| ||||||||    
T  44132505 tatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgc 44132406  T
Q  376 cctttg 381  Q
    ||||||    
T  44132405 cctttg 44132400  T

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Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 276 - 381
Target Start/End: Complemental strand, 44140927 - 44140822
Alignment:
Q  276 tatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttctgc 375  Q
    ||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||||||||| || |||||||| ||||||||    
T  44140927 tatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgc 44140828  T
Q  376 cctttg 381  Q
    ||||||    
T  44140827 cctttg 44140822  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 44128354 - 44128317
Alignment:
Q  239 aaaaatacttacacatgcgctgaaatttctctttgagt 276  Q
    ||||||||||||||||||| || |||||||||||||||    
T  44128354 aaaaatacttacacatgcgttggaatttctctttgagt 44128317  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 44132559 - 44132522
Alignment:
Q  239 aaaaatacttacacatgcgctgaaatttctctttgagt 276  Q
    ||||||||||||||||||| || |||||||||||||||    
T  44132559 aaaaatacttacacatgcgttggaatttctctttgagt 44132522  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 44140981 - 44140944
Alignment:
Q  239 aaaaatacttacacatgcgctgaaatttctctttgagt 276  Q
    ||||||||||||||||||| || |||||||||||||||    
T  44140981 aaaaatacttacacatgcgttggaatttctctttgagt 44140944  T

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Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 288 - 381
Target Start/End: Original strand, 24165499 - 24165592
Alignment:
Q  288 taaagtaaaaatcaggataagtgctttgttcaacacaatttgccggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttg 381  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||  |||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  24165499 taaagtagaaatcaggatatgtgctttgttcaacacagtttggtggatttgcagtgccaatggccaagatagttgcagggccttctgccctttg 24165592  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 24163958 - 24164045
Alignment:
Q  45 ggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcacctgaagtagttataatggaatgac 132  Q
    ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| | |||||||||| || ||||||||| | ||||||    
T  24163958 ggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagttataaagaaatgac 24164045  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 37859494 - 37859600
Alignment:
Q  7 ttgcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatc 106  Q
    |||||||||||||||| |||||||| || || ||||| ||||| |||||||  || |||||||| |  |||||||||||| |||||||||| || |||||    
T  37859494 ttgcatccaatgaaggtgccatgtactcgcatacacttggattctctttcaggatctcttctgtcaagtacatgtatctcttcttgatcattgacttatc 37859593  T
Q  107 acctgaa 113  Q
    |||||||    
T  37859594 acctgaa 37859600  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 37863520 - 37863626
Alignment:
Q  7 ttgcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatc 106  Q
    |||||||||| ||||| ||||| || ||||| | ||| ||||| || |||||||| ||||| || | || |||||||||| |||| ||||| ||||||||    
T  37863520 ttgcatccaacgaaggtgccatatactcacataaactaggattctccttcaaaatctcttcagtcaaatgcatgtatctcttcttaatcatagatttatc 37863619  T
Q  107 acctgaa 113  Q
    |||||||    
T  37863620 acctgaa 37863626  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 35250803 - 35250727
Alignment:
Q  7 ttgcatccaatgaaggggccatgtattcacaaacactgggattttctttcaaaatttcttctgttagatacatgtat 83  Q
    ||||||||||||| || ||||||||  |||| | | ||||||||||||||| |||||| ||||||| || |||||||    
T  35250803 ttgcatccaatgatggtgccatgtaagcacacatattgggattttctttcagaatttcctctgttaaatgcatgtat 35250727  T

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