View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_22 (Length: 383)
Name: NF17473_low_22
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 7452909 - 7452726
Alignment:
| Q |
1 |
gcatccaaggaagagtataggttaggggaatttgcacaatgcatgacaagaacaaggtgcaaaggtatgaggttggattgtcctcttcactgtggtggac |
100 |
Q |
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| T |
7452909 |
gcatctaaggaagagtataggttaggggaatttgcacaatgcatgacaagaacaaggtgcaaaggtatgaggttggattgtcctcttcactgtggtggac |
7452810 |
T |
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| Q |
101 |
cttgtttctatgactgctaccatatgtgcaaagctcattgtcgacgaccctaaattatatcatgtaactagtcatttccttacc |
184 |
Q |
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| T |
7452809 |
cttgtttctatgactgctaccatatgtgcaaagctcattgtcgacgaccctaaattatatcatgtaactagtcatttccttacc |
7452726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 225 - 369
Target Start/End: Complemental strand, 7452685 - 7452543
Alignment:
| Q |
225 |
ggatcaaaatcagtgttttacattgcttgcttttcctaggtagacaactagacaagcatgttgaattgacatnnnnnnnnnnnnnttcattttacttcaa |
324 |
Q |
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| T |
7452685 |
ggatcaaaatcagtgttttacattgcttgcttttcctaggtagacaactagacaagcatgttgaattgacat--tgtgtgtgtgtttcattttacttcaa |
7452588 |
T |
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| Q |
325 |
ccatatatgttagatgtgacaagtgatgcatactccctatatttg |
369 |
Q |
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| T |
7452587 |
ccatatatgttagatgtgacaagtgatgcatactccctatatttg |
7452543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 52827033 - 52826916
Alignment:
| Q |
31 |
tttgcacaatgcatgacaagaacaaggtgcaaaggtatgaggttggattgtcctcttcactgtggtggaccttgtttctatgactgctaccatatgtgca |
130 |
Q |
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| T |
52827033 |
tttgcacaatgcatgacaaaaactcgatgcaagggaatgagattggactgccctcttcattgtggtggaccatgttactatgattgtcaccatatgtgta |
52826934 |
T |
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| Q |
131 |
aagctcattgtcgacgac |
148 |
Q |
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| T |
52826933 |
aagctcattgtcgccgac |
52826916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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