View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_23 (Length: 368)
Name: NF17473_low_23
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 4555941 - 4556209
Alignment:
| Q |
16 |
atataacctctctctcaaattccaatatca------tctcctctttacaatttaatggtctagattcccacactaattcttcaactttcttttttaccat |
109 |
Q |
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| T |
4555941 |
atataacctctctctcaaattccaatatcaatgtcatctcctctttataatttaatggtctagattcccacactaattcttcaactt-cttttttaccat |
4556039 |
T |
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| Q |
110 |
gtatcatttttgtcacatcacttatttttcaacatgcaagactttattccattttgcatatcctacaccccatgtttgtaattgcagacaatctaatttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
4556040 |
gtatcatttttgtcacatcacttatttttcaacatgcaagactttattccattttgcatatcctacactccatgtttgtaattgcagacgatctaatttc |
4556139 |
T |
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| Q |
210 |
tcataaatgatctcaacctaggatcatggatatggtcaatatcatggataccgctagaaaatccatttgt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4556140 |
tcataaatgatctcaacctaggatcatggatatggtcaatatcatggataccgctagaaaattcatttgt |
4556209 |
T |
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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 16686988 - 16686899
Alignment:
| Q |
193 |
gcagacaatctaatttctcataaatgatctcaacctaggatcatggatatggtcaatatcatggataccgctagaaaatccatttgtggt |
282 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||| |||| |||| |||||||| |||||||||||||||||||| |
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| T |
16686988 |
gcagacgatctaatttctcataaatgatctcaacctatgatcatggatgtggttaataccatggatagtactagaaaatccatttgtggt |
16686899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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