View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_24 (Length: 367)
Name: NF17473_low_24
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_24 |
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| [»] scaffold0493 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 44999455 - 44999790
Alignment:
| Q |
19 |
tgatgatcatatatttgttggaaccactttgattagtatgtatgctgaatgtgggtgttatgaatatgcgagaaaggtgtttgatgaaatgtctcaaccg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44999455 |
tgatgatcatatatttgttggaaccactttgattagtatgtatgctgaatgtgggtgttatgaatatgcgagaaaggtgtttgatgaaatgtctcaaccg |
44999554 |
T |
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| Q |
119 |
aatgttgtagcatggaatgcggttgttactgcttgttttaggtgtggggatgtggagggtgcttggggtttgtttgaaaggatgccggttaggaacttga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44999555 |
aatgttgtagcatggaatgcggttgttactgcttgttttaggtgtggggatgtggagggtgcttggggtttgtttgaaaggatgccggttaggaatttga |
44999654 |
T |
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| Q |
219 |
cttcttggaatacgatgcttgcgggttatgttaaagcaggtcagctttggttggcgagaagagttttttgtgaaatgaagatgagagatgatgcttcttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44999655 |
cttcttggaatacgatgcttgcgggttatgttaaagcaggtcagctttggttggcgagaagagttttttgtgaaatgaagatgagagatgatgcttcttg |
44999754 |
T |
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| Q |
319 |
gagtactatgattgttgggtttgctaaaagtggttc |
354 |
Q |
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| T |
44999755 |
gagtactatgattgttgggtttgctaaaagtggttc |
44999790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0493 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0493
Description:
Target: scaffold0493; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 2432 - 2767
Alignment:
| Q |
19 |
tgatgatcatatatttgttggaaccactttgattagtatgtatgctgaatgtgggtgttatgaatatgcgagaaaggtgtttgatgaaatgtctcaaccg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2432 |
tgatgatcatatatttgttggaaccactttgattagtatgtatgctgaatgtgggtgttatgaatatgcgagaaaggtgtttgatgaaatgtctcaaccg |
2531 |
T |
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| Q |
119 |
aatgttgtagcatggaatgcggttgttactgcttgttttaggtgtggggatgtggagggtgcttggggtttgtttgaaaggatgccggttaggaacttga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2532 |
aatgttgtagcatggaatgcggttgttactgcttgttttaggtgt-gggatgtggagggtgcttggggtttgtttgaaaggatgccggttaggaatttga |
2630 |
T |
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| Q |
219 |
cttcttggaatacgatgcttgcgggttatgttaaagcaggtcagctttggttggcgagaag-agttttttgtgaaatgaagatgagagatgatgcttctt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2631 |
cttcttggaatacgatgcttgcgggttatgttaaagcaggtcagctttggttggcgagaagtagttttttgtgaaatgaagatgagagatgatgcttctt |
2730 |
T |
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| Q |
318 |
ggagtactatgattgttgggtttgctaaaagtggttc |
354 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2731 |
ggagtactatgattgttgggtttgctaaaagtggttc |
2767 |
T |
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