View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_29 (Length: 322)
Name: NF17473_low_29
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 5228157 - 5228462
Alignment:
| Q |
1 |
caatttgagttagaatttgttgcacgtaaccacctccttgatttcattcaatgcatacatgatttgatatttaaaagaattgaacttttcatcttcataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5228157 |
caatttgagttagaatttgttgcacgtaaccacctccttgatttcattcaatgcatacat-atttgatatttaaaagaattgaacttttcatcttcataa |
5228255 |
T |
|
| Q |
101 |
tttcnnnnnnnggatgaaatcttgaatgtgttcttcgtagcaccggatggaactggaacaacaaatttaatattttagttaaaaacaacatttcatgaga |
200 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| || |||||| |||| |
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| T |
5228256 |
tttcaaaaaaaagatgaaatcttgaatgtgttcttcgtagcatcggatggaattggaacaacaaatttaatattttagttgaaaataatatttcacgaga |
5228355 |
T |
|
| Q |
201 |
tataatgttggtctaacactcaacagtgagagaaaatatgccgacataaagtagaagggaggggttgtgcaaaacctggaactaagaggatggggacggg |
300 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
5228356 |
tataatgttggtctaacactcaagagtgagaggaaatatgccgatataaagtagaagggagggcttgtgcaaaacctggaactaagaggatgggaacggg |
5228455 |
T |
|
| Q |
301 |
tgagaag |
307 |
Q |
| |
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||||||| |
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| T |
5228456 |
tgagaag |
5228462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 38138175 - 38137874
Alignment:
| Q |
1 |
caatttgagttagaatttgttgcacgtaaccacctccttgatttcattcaatgcatacatgatttgatatttaaaagaattgaacttttcatcttcataa |
100 |
Q |
| |
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|||||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
38138175 |
caatttgagttataaatttttgcacgtaaccacctccttgatttcat--aatgcatacatgatttgatatttaaaa-agttgaacttttcatcttcataa |
38138079 |
T |
|
| Q |
101 |
tttcnnnnnnnggatgaaatcttgaatgtgttcttcgtagcaccggatggaactggaacaacaaatttaatattttagttaaaaacaacatttcatgaga |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38138078 |
ttttaaaaaaaggatgaaatcttgaatgtgttcttcgtagcaccagatggaactggaacaacaaatttaatattttagttaaaaacaacatttcatgaga |
38137979 |
T |
|
| Q |
201 |
tataatgttggtctaacactcaacagtgagagaaaatatgccgacataaagtagaagggaggggttgtgcaaaacctggaactaagaggatggggacggg |
300 |
Q |
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|||||||||||||||||| ||||| ||||| ||||||||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||| || || |
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| T |
38137978 |
tataatgttggtctaaca--caacaccgagaggaaatatgccgatataatgtagaagggagggcttgtgcaaaaccaggaactaagaggatgggaacagg |
38137881 |
T |
|
| Q |
301 |
tgagaag |
307 |
Q |
| |
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| ||||| |
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|
| T |
38137880 |
ttagaag |
38137874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 38883823 - 38883753
Alignment:
| Q |
6 |
tgagttagaatttgttgcacgtaaccacctccttgatttcattcaatgcatacatgatttgatatttaaaa |
76 |
Q |
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||||||| ||||||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||||||| |
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| T |
38883823 |
tgagttacaatttgttgcatgtaaccacccccttgattttacccaatgcatacacgatttgatatttaaaa |
38883753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 38883555 - 38883492
Alignment:
| Q |
128 |
gtgttcttcgtagcaccggatggaactggaacaacaaatttaatattttagttaaaaacaacatt |
192 |
Q |
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|||||||| ||||||| | |||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
38883555 |
gtgttctttgtagcactg-atggaactggaacaacaaatttcatattttagttgaaaacaacatt |
38883492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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