View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_3 (Length: 646)
Name: NF17473_low_3
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 198 - 629
Target Start/End: Complemental strand, 8562035 - 8561605
Alignment:
| Q |
198 |
acttggtgtcgcaacaattaaatgtgttacctcaatataatcttgtaagaaaattgaagtagagaaccaatttaaaatggaagaaaatatagaaaactat |
297 |
Q |
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| T |
8562035 |
acttggtgtcgcaacaattaaatgtgttacctcaatataatcttgtaagaaaattgaagtagagaaccaatttaaaatggaagaaaatatagaaaactat |
8561936 |
T |
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| Q |
298 |
aattgttggagtnnnnnnngaagagagaagggataaaataaaggaaaataccctaggaaaggttggcatgtatgtaaatgcatgataaggaaaggaaaat |
397 |
Q |
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| T |
8561935 |
aattgttg-agtaaaaaaagaagagagaagggataaaataaaggaaaataccctaggaaaggttggcatctatgtaaatgcatgataaggaaaggaaaat |
8561837 |
T |
|
| Q |
398 |
ctcatgatggcggtgtcaaaatcaaagaaattgtgtaatctgaaaagttgaaaaacataaagacacgtagacgaaggaagagagaatgtatattattttg |
497 |
Q |
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| T |
8561836 |
ctcatgatggcggtgtcaaaatcaagcaaattgtgtaatctgaaaagttgaaaaacataaagacacgtagacgaaggaagagagaatgtatattattttg |
8561737 |
T |
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| Q |
498 |
aatgttttttggttttgcatcgatcaagatcaaccatgagactgttacaacagaatgaattcagaaaggaaagattgaatagttccatccaccttggttt |
597 |
Q |
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| T |
8561736 |
aatgttttttggttttgcatcgatcaagatcaaccatgagactgttacaacagaatgaattcagaaaggaaagattgaatagttccatccaccttggttt |
8561637 |
T |
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| Q |
598 |
tccttattcgtttgtttttatgtataacttgt |
629 |
Q |
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| T |
8561636 |
tccttattcgtttgtttttatgtataacttgt |
8561605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 8562224 - 8562110
Alignment:
| Q |
11 |
tccaagaatatgatcatgggttatactaaccaatacc-gagtacctctcgtgcatcatcaaatgatgattttgggatggaaacgaa-gctttcaaaattt |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
8562224 |
tccaacaatatgatcatgggttatactaaccaatacccgagtacctctcgtgcatcatcaaaggatgattttgggatggaaacgaaggctttcaaaattt |
8562125 |
T |
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| Q |
109 |
gaaactgttgtaata |
123 |
Q |
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| T |
8562124 |
gaaactgttgtaata |
8562110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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