View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17473_low_30 (Length: 318)
Name: NF17473_low_30
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 117 - 310
Target Start/End: Original strand, 28714876 - 28715065
Alignment:
| Q |
117 |
catgcacacaccgtacatcatcaataccaataaaa-acaaacctccaaaatcaaatcaagacaaatactaataagctaaaccacatgaaagctgtcatca |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||| || ||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
28714876 |
catgcacacaccgtacatcatcaacaccgataaaaaacaaacctctaaaatcaaatcaacacgaatactaatgagctaaacaacatgaaagctgtcatca |
28714975 |
T |
|
| Q |
216 |
acatttacggttcttttaatttctcaactggtcatttaatttggtgaaaacaaatatttttacagctgtttactttacgttatactgatgatgtc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28714976 |
acatttacggttcttttaatttctcaactggtc-----atttggtgaaaacaaatatttttgcagctgtttactttacgttatactgatgatgtc |
28715065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 28709764 - 28709839
Alignment:
| Q |
228 |
cttttaatttctcaactggtcatttaatttggtgaaaacaaatatttttacagctgtttactttacgttatactgatgatg |
308 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
28709764 |
cttttaatttctcaactggtcattt-----ggtgaaaaccaatattttttcagctgtttactgtacgttatattgatgatg |
28709839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 28718459 - 28718534
Alignment:
| Q |
228 |
cttttaatttctcaactggtcatttaatttggtgaaaacaaatatttttacagctgtttactttacgttatactgatgatg |
308 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
28718459 |
cttttaatttctcaactggtcattt-----ggtgaaaaccaatattttttcagctgtttactgtacgttatattgatgatg |
28718534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 28702400 - 28702477
Alignment:
| Q |
213 |
tcaacatttacggttcttttaatttctcaactggtcatttaatttggtgaaaacaa-atatttttacagctgtttacttt |
291 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||| ||| ||||||| ||| | ||||| |||||||||||||| |
|
|
| T |
28702400 |
tcaacatttatggttcttttaatttcttaactggtcatt--attaggtgaaaccaataatttttttcagctgtttacttt |
28702477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 28007025 - 28006968
Alignment:
| Q |
118 |
atgcacacaccgtacatcatcaataccaata-aaaacaaacctccaaaatcaaatcaa |
174 |
Q |
| |
|
||||| |||||||||||||| || ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
28007025 |
atgcatacaccgtacatcataaacaccaataaaaaacaaacctccaaaacaaaatcaa |
28006968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University