View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_40 (Length: 250)
Name: NF17473_low_40
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 10750902 - 10750665
Alignment:
| Q |
13 |
aaaatcggttgcaattgatcgatttctttgtagaatagggaggcactaaagctaggcatcaaaagggttctattcaacattctagcagtaagacaagccc |
112 |
Q |
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| T |
10750902 |
aaaatcggttgcaattgatcgatttctttgtagaatagggaggcactaaagctaggcatcaaaagggttctattcaacattctagcagtaagacaagacc |
10750803 |
T |
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| Q |
113 |
ttgcgaacgcgattttctgattgtttaatccccaaacaagctgaggaactaccaaaaacttaaactgcctaattccaaattcataagaactcattgatgg |
212 |
Q |
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| T |
10750802 |
ttgcgaacgcgattttctgattgtttaatccccaaacaagctgaggaactaccaaaaacttaaattgcctaatttcaaattcataagaactcattgatgg |
10750703 |
T |
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| Q |
213 |
agaagttaggttgtcgttaaagacaaaatttctccatt |
250 |
Q |
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| T |
10750702 |
agaagttaggttgtcgttaaagacgaaatttctccatt |
10750665 |
T |
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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 32560480 - 32560321
Alignment:
| Q |
14 |
aaatcggttgcaattgatcgatttctttgtagaatagggaggcactaaagctaggcatcaaaagggttctattcaacattctagcagtaagacaagccct |
113 |
Q |
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|||||||||| || |||||||||| ||||| || | ||| ||||||| ||||||||||| || ||||| ||||||||||| ||||||||||||||||| |
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| T |
32560480 |
aaatcggttgtaaaagatcgatttccttgtaaaacaaggaagcactaagactaggcatcaatagtgttctgttcaacattcttgcagtaagacaagccct |
32560381 |
T |
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| Q |
114 |
tgcgaacgcgattttctgattgtttaatccccaaacaagctgaggaactaccaaaaactt |
173 |
Q |
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| T |
32560380 |
tgcaaatgcaatcttttggttgtttaatccccaaacaatttgaggaacctccaaaaactt |
32560321 |
T |
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