View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_48 (Length: 229)
Name: NF17473_low_48
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 12171228 - 12171428
Alignment:
| Q |
20 |
ggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaactgcttgtgctggaactgtagttaccgaggac |
119 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
12171228 |
ggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaactgcttgtgctagaactgtagttgctgaggac |
12171327 |
T |
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| Q |
120 |
aaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgttttcactggtgattctttccgatgatgtcca |
217 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |
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| T |
12171328 |
aaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgattatttcctatgatgtcca |
12171427 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
12171428 |
t |
12171428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 12415656 - 12415856
Alignment:
| Q |
20 |
ggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaactgcttgtgctggaactgtagttaccgaggac |
119 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
12415656 |
ggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaactgcttgtgctagaactgtagttgctgaggac |
12415755 |
T |
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| Q |
120 |
aaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgttttcactggtgattctttccgatgatgtcca |
217 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |
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| T |
12415756 |
aaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgattatttcctatgatgtcca |
12415855 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
12415856 |
t |
12415856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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