View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17473_low_51 (Length: 226)
Name: NF17473_low_51
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_51 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 16275102 - 16274876
Alignment:
| Q |
1 |
taacaccatctttgtagaaacaacagactccagtattgtgtataatcgctgtattataatataaaaaactgtgattttcattta-catgattccaatcaa |
99 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
16275102 |
taacacaatctttgtagaaacaacagactccagtattgtgtataaccgttgtattataatataaaaaactgtgattttcaattaacatgattccaatcaa |
16275003 |
T |
|
| Q |
100 |
acacagaaaatccaatgtaaaatcacattctattggaacctaataaagggaatatagtagaagtcacattatgcaataacatagcatctaataacaatta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16275002 |
acacagaaaatccaatgtaaaatcacattctattggaacctaataaagggaatatagtagaagtcacattatgcaataacatagcatctaataacaatta |
16274903 |
T |
|
| Q |
200 |
gaaaacaataaaaacggcaatcacaca |
226 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
16274902 |
gaaaacaataaaaacggcaatcacaca |
16274876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University