View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17473_low_52 (Length: 222)

Name: NF17473_low_52
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17473_low_52
NF17473_low_52
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-36)||(27450-27485)
[»] chr8 (8 HSPs)
chr8 (1-36)||(32536881-32536916)
chr8 (1-36)||(32537325-32537360)
chr8 (1-36)||(38023800-38023835)
chr8 (1-36)||(38024368-38024403)
chr8 (1-34)||(41859486-41859519)
chr8 (1-34)||(41859935-41859968)
chr8 (1-36)||(37639887-37639922)
chr8 (1-36)||(37640434-37640469)
[»] chr7 (4 HSPs)
chr7 (1-36)||(668355-668390)
chr7 (1-36)||(38072074-38072109)
chr7 (1-33)||(668943-668975)
chr7 (1-36)||(7677593-7677628)
[»] chr6 (7 HSPs)
chr6 (1-36)||(15083155-15083190)
chr6 (1-36)||(22580661-22580696)
chr6 (1-36)||(22587147-22587182)
chr6 (1-36)||(33479873-33479908)
chr6 (1-34)||(33480467-33480500)
chr6 (1-36)||(15082573-15082608)
chr6 (1-36)||(22580111-22580146)
[»] chr5 (5 HSPs)
chr5 (1-36)||(33002653-33002688)
chr5 (1-34)||(686592-686625)
chr5 (1-34)||(687187-687220)
chr5 (1-34)||(15183856-15183889)
chr5 (1-36)||(15183265-15183300)
[»] chr4 (15 HSPs)
chr4 (1-36)||(10424299-10424334)
chr4 (1-36)||(21165623-21165658)
chr4 (1-36)||(26611120-26611155)
chr4 (1-36)||(29651169-29651204)
chr4 (1-36)||(31836296-31836331)
chr4 (1-36)||(36865555-36865590)
chr4 (1-36)||(45230541-45230576)
chr4 (1-35)||(21166213-21166247)
chr4 (1-34)||(31835324-31835357)
chr4 (1-33)||(26610522-26610554)
chr4 (1-36)||(10424896-10424931)
chr4 (1-36)||(29650590-29650625)
chr4 (1-36)||(39522551-39522586)
chr4 (1-33)||(36864991-36865023)
chr4 (1-33)||(45235800-45235832)
[»] chr3 (14 HSPs)
chr3 (1-36)||(3971168-3971203)
chr3 (1-36)||(3998678-3998713)
chr3 (1-36)||(36750275-36750310)
chr3 (1-36)||(38922919-38922954)
chr3 (1-36)||(44686430-44686465)
chr3 (1-36)||(45242242-45242277)
chr3 (1-36)||(45242824-45242859)
chr3 (1-36)||(52492062-52492097)
chr3 (1-34)||(3971744-3971777)
chr3 (1-34)||(3998101-3998134)
chr3 (1-34)||(41755675-41755708)
chr3 (1-34)||(44687002-44687035)
chr3 (1-33)||(41756272-41756304)
chr3 (1-36)||(38923502-38923537)
[»] chr2 (3 HSPs)
chr2 (1-36)||(21471193-21471228)
chr2 (1-36)||(21471791-21471826)
chr2 (1-36)||(37548176-37548211)
[»] chr1 (9 HSPs)
chr1 (1-36)||(16270384-16270419)
chr1 (1-36)||(16270986-16271021)
chr1 (1-36)||(38931083-38931118)
chr1 (1-36)||(51975064-51975099)
chr1 (1-34)||(9948741-9948774)
chr1 (1-34)||(51974613-51974646)
chr1 (1-33)||(38930488-38930520)
chr1 (1-36)||(6076705-6076740)
chr1 (1-36)||(48971881-48971916)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-31)||(1-31)


Alignment Details
Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27485 - 27450
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  27485 aaatcacaaattcaacaaccactttgaccaccactg 27450  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32536881 - 32536916
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  32536881 aaatcacaaattcaacaaccactttgaccaccactg 32536916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32537360 - 32537325
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  32537360 aaatcacaaattcaacaaccactttgaccaccactg 32537325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38023800 - 38023835
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  38023800 aaatcacaaattcaacaaccactttgaccaccactg 38023835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38024403 - 38024368
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  38024403 aaatcacaaattcaacaaccactttgaccaccactg 38024368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41859486 - 41859519
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  41859486 aaatcacaaattcaacaaccactttgaccaccac 41859519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41859968 - 41859935
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  41859968 aaatcacaaattcaacaaccactttgaccaccac 41859935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37639887 - 37639922
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  37639887 aaatcgcaaattcaacaaccactttgaccaccactg 37639922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 37640469 - 37640434
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  37640469 aaatcacaaattcaacaaccaccttgaccaccactg 37640434  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 668355 - 668390
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  668355 aaatcacaaattcaacaaccactttgaccaccactg 668390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38072074 - 38072109
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  38072074 aaatcacaaattcaacaaccactttgaccaccactg 38072109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 668975 - 668943
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccacca 33  Q
    |||||||||||||||||||||||||||||||||    
T  668975 aaatcacaaattcaacaaccactttgaccacca 668943  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7677593 - 7677628
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    |||||||||||||||||| |||||||||||||||||    
T  7677593 aaatcacaaattcaacaatcactttgaccaccactg 7677628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 15083190 - 15083155
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  15083190 aaatcacaaattcaacaaccactttgaccaccactg 15083155  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22580696 - 22580661
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  22580696 aaatcacaaattcaacaaccactttgaccaccactg 22580661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22587182 - 22587147
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  22587182 aaatcacaaattcaacaaccactttgaccaccactg 22587147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 33479873 - 33479908
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  33479873 aaatcacaaattcaacaaccactttgaccaccactg 33479908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33480500 - 33480467
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  33480500 aaatcacaaattcaacaaccactttgaccaccac 33480467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15082573 - 15082608
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  15082573 aaatcacaaattcaacaactactttgaccaccactg 15082608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22580111 - 22580146
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22580111 aaatcacaaattcaacaactactttgaccaccactg 22580146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33002688 - 33002653
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  33002688 aaatcacaaattcaacaaccactttgaccaccactg 33002653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 686592 - 686625
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  686592 aaatcacaaattcaacaaccactttgaccaccac 686625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 687220 - 687187
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  687220 aaatcacaaattcaacaaccactttgaccaccac 687187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 15183889 - 15183856
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  15183889 aaatcacaaattcaacaaccactttgaccaccac 15183856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15183265 - 15183300
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  15183265 aaatcacaaattcaacaaccattttgaccaccactg 15183300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10424299 - 10424334
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  10424299 aaatcacaaattcaacaaccactttgaccaccactg 10424334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21165623 - 21165658
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  21165623 aaatcacaaattcaacaaccactttgaccaccactg 21165658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 26611155 - 26611120
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  26611155 aaatcacaaattcaacaaccactttgaccaccactg 26611120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29651204 - 29651169
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  29651204 aaatcacaaattcaacaaccactttgaccaccactg 29651169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31836331 - 31836296
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  31836331 aaatcacaaattcaacaaccactttgaccaccactg 31836296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36865590 - 36865555
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  36865590 aaatcacaaattcaacaaccactttgaccaccactg 36865555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45230541 - 45230576
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  45230541 aaatcacaaattcaacaaccactttgaccaccactg 45230576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21166247 - 21166213
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccact 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21166247 aaatcacaaattcaacaaccactttgaccaccact 21166213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31835324 - 31835357
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  31835324 aaatcacaaattcaacaaccactttgaccaccac 31835357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26610522 - 26610554
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccacca 33  Q
    |||||||||||||||||||||||||||||||||    
T  26610522 aaatcacaaattcaacaaccactttgaccacca 26610554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10424931 - 10424896
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  10424931 aaatcataaattcaacaaccactttgaccaccactg 10424896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 29650590 - 29650625
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  29650590 aaatcacaaattcaacaaccactttggccaccactg 29650625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39522551 - 39522586
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  39522551 aaatcacaaattcaacaaccacttttaccaccactg 39522586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36864991 - 36865023
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccacca 33  Q
    |||||| ||||||||||||||||||||||||||    
T  36864991 aaatcataaattcaacaaccactttgaccacca 36865023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45235832 - 45235800
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccacca 33  Q
    |||||| ||||||||||||||||||||||||||    
T  45235832 aaatcataaattcaacaaccactttgaccacca 45235800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3971168 - 3971203
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  3971168 aaatcacaaattcaacaaccactttgaccaccactg 3971203  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3998713 - 3998678
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  3998713 aaatcacaaattcaacaaccactttgaccaccactg 3998678  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36750310 - 36750275
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  36750310 aaatcacaaattcaacaaccactttgaccaccactg 36750275  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38922919 - 38922954
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  38922919 aaatcacaaattcaacaaccactttgaccaccactg 38922954  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44686430 - 44686465
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  44686430 aaatcacaaattcaacaaccactttgaccaccactg 44686465  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45242242 - 45242277
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  45242242 aaatcacaaattcaacaaccactttgaccaccactg 45242277  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45242859 - 45242824
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  45242859 aaatcacaaattcaacaaccactttgaccaccactg 45242824  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 52492062 - 52492097
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  52492062 aaatcacaaattcaacaaccactttgaccaccactg 52492097  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3971777 - 3971744
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  3971777 aaatcacaaattcaacaaccactttgaccaccac 3971744  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3998101 - 3998134
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  3998101 aaatcacaaattcaacaaccactttgaccaccac 3998134  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41755675 - 41755708
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  41755675 aaatcacaaattcaacaaccactttgaccaccac 41755708  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 44687035 - 44687002
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  44687035 aaatcacaaattcaacaaccactttgaccaccac 44687002  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41756304 - 41756272
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccacca 33  Q
    |||||||||||||||||||||||||||||||||    
T  41756304 aaatcacaaattcaacaaccactttgaccacca 41756272  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38923537 - 38923502
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  38923537 aaatcacaaattcagcaaccactttgaccaccactg 38923502  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21471193 - 21471228
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  21471193 aaatcacaaattcaacaaccactttgaccaccactg 21471228  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 21471826 - 21471791
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  21471826 aaatcacaaattcaacaaccactttgaccaccactg 21471791  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37548176 - 37548211
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  37548176 aaatcacaaattcaacaaccactttgaccaccactg 37548211  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16270384 - 16270419
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  16270384 aaatcacaaattcaacaaccactttgaccaccactg 16270419  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 16271021 - 16270986
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  16271021 aaatcacaaattcaacaaccactttgaccaccactg 16270986  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38931118 - 38931083
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  38931118 aaatcacaaattcaacaaccactttgaccaccactg 38931083  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 51975099 - 51975064
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  51975099 aaatcacaaattcaacaaccactttgaccaccactg 51975064  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9948774 - 9948741
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  9948774 aaatcacaaattcaacaaccactttgaccaccac 9948741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 51974613 - 51974646
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  51974613 aaatcacaaattcaacaaccactttgaccaccac 51974646  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38930488 - 38930520
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccacca 33  Q
    |||||||||||||||||||||||||||||||||    
T  38930488 aaatcacaaattcaacaaccactttgaccacca 38930520  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6076740 - 6076705
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||||| ||||||||    
T  6076740 aaatcacaaattcaacaaccactttgatcaccactg 6076705  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 48971881 - 48971916
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccaccactg 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  48971881 aaatcacaaattcaacaaccactttaaccaccactg 48971916  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 31 - 1
Alignment:
Q  1 aaatcacaaattcaacaaccactttgaccac 31  Q
    |||||||||||||||||||||||||||||||    
T  31 aaatcacaaattcaacaaccactttgaccac 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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