View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_57 (Length: 208)
Name: NF17473_low_57
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 43942715 - 43942888
Alignment:
| Q |
16 |
cactaccttgggttcaccgtcgatgtatagaacggcggcgttccggtaagacaagacggaatatccggttttagggttgaatcgaatggggacggcgcgg |
115 |
Q |
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| T |
43942715 |
cactaccttgggttcaccgtcgatgtatagaacggcggcgttccggtaagacaagacggaatatccggttttagggttgaatcgaatggggacggcgcgg |
43942814 |
T |
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| Q |
116 |
ccagaacgagagttgaaagcgaaaatggatttgagggagtatttgtggaggatctcacgaacctctaaccgatt |
189 |
Q |
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| T |
43942815 |
ccagaacgagggttgaaagcgaaaatggatttgagggagtatttgtggaggatctcacgaacctctaaccgatt |
43942888 |
T |
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