View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17473_low_8 (Length: 524)
Name: NF17473_low_8
Description: NF17473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17473_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 242 - 462
Target Start/End: Complemental strand, 28714188 - 28713974
Alignment:
| Q |
242 |
tgactggagttgcaaaataccagctcacatttttgagtgattttgatcggttcatttaaaccccaagttaagtggatgggattgagttagattgaacttt |
341 |
Q |
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| T |
28714188 |
tgactggagttgcaaaataccagctcacatttttgagtgattttgatcggttcatttaaaccccaatttaagtggatgggattgagttagattgaacttt |
28714089 |
T |
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| Q |
342 |
ctaaccagtaggattggctcaccttgacaattatgcactataatatcgtcttgttattaactcatatatagaaacaacctggtcatatagttgatacaaa |
441 |
Q |
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| T |
28714088 |
ctaaccagtaggattggctcaccttgacaattatgcactataatatcgtcttgttattaactc----atagaaacaacctggtc--atagttgatacaaa |
28713995 |
T |
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| Q |
442 |
ttcaatatattaacataaact |
462 |
Q |
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||||||||||||||||||||| |
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| T |
28713994 |
ttcaatatattaacataaact |
28713974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 28714761 - 28714634
Alignment:
| Q |
46 |
cttgaaattttggttctttaaaaaagaatttgaaattttggttatttcacccaatagtggcactgcgcgcatgtgcataaaagtgctactgcgcatgaac |
145 |
Q |
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| T |
28714761 |
cttgaaattttggttctttaaaaaagaatttgaaattttggttatttcacccaatagcggcactgc----atgtgcataaaagtgctactgcgcatgaac |
28714666 |
T |
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| Q |
146 |
cacgcgaaaaacgtgaaagtttgcattcatta |
177 |
Q |
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| T |
28714665 |
cacgcgaaaaacgtgaaagtttgcattcatta |
28714634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 28714269 - 28714220
Alignment:
| Q |
184 |
ggagctaacatcatcttctctcccttaatgataggagtcacagtatgtct |
233 |
Q |
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| T |
28714269 |
ggagctaacatcatattctctcccttaatgataggagtcacagtatgtct |
28714220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 28698921 - 28698848
Alignment:
| Q |
246 |
tggagttgcaaaataccagctcacatttttg--agtgattttgatcggttcatttaaaccccaagttaagtggat |
318 |
Q |
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| T |
28698921 |
tggagttgcaaaatag-agctcacatttttgtgagtgattttgatcagttcatttgacccccaagttaagtggat |
28698848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 18666769 - 18666719
Alignment:
| Q |
432 |
ttgatacaaattcaatatattaacataaacttctcacaagaaacatggata |
482 |
Q |
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| T |
18666769 |
ttgacacaaactcaatatataaacataaatttctcacaagaaacatggata |
18666719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 478
Target Start/End: Complemental strand, 28698178 - 28698130
Alignment:
| Q |
430 |
agttgatacaaattcaatatattaacataaacttctcacaagaaacatg |
478 |
Q |
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| T |
28698178 |
agttgacacaaactcgatatattaacataaaattctcacaagaaacatg |
28698130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35877102 - 35877130
Alignment:
| Q |
1 |
tacaatttgggacggagggagtaataaat |
29 |
Q |
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| T |
35877102 |
tacaatttgggacggagggagtaataaat |
35877130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 40704650 - 40704679
Alignment:
| Q |
1 |
tacaatttgggacggagggagtaataaatt |
30 |
Q |
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| T |
40704650 |
tacaatttgggacggagggagtaataaatt |
40704679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43576999 - 43577027
Alignment:
| Q |
1 |
tacaatttgggacggagggagtaataaat |
29 |
Q |
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| T |
43576999 |
tacaatttgggacggagggagtaataaat |
43577027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32833586 - 32833558
Alignment:
| Q |
1 |
tacaatttgggacggagggagtaataaat |
29 |
Q |
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| T |
32833586 |
tacaatttgggacggagggagtaataaat |
32833558 |
T |
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