View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_high_11 (Length: 451)
Name: NF17474_high_11
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 443
Target Start/End: Complemental strand, 54396527 - 54396101
Alignment:
| Q |
17 |
actgaggccagatataacatccacacaactagctatcccacaacatcaggtgcacgtttgcagaactacaccattttgaaaatctcaaaggatatctatg |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396527 |
actgaggccagatataacattcacacaactagctatcccacaacatcaggtgcacgtttgcagaactacaccattttgaaaatctcaaaggatatctatg |
54396428 |
T |
|
| Q |
117 |
ctcctaaatgggtagcttgtcaccctaggccttacccttatgctctttactattgccactacctagacatagggagtaaggtcttcaaagttcttctaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396427 |
ctcctaaatgggtagcttgtcaccctaggccttacccttatgctctttactattgccactacctagacatagggagtaaggtcttcaaagttcttctaaa |
54396328 |
T |
|
| Q |
217 |
gggtcaatatggagacataatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaactacttggaataaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396327 |
gggtcaatatggagacataatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaactacttggaataaag |
54396228 |
T |
|
| Q |
317 |
cctggggaagctcctatgtgccatttcttccctgtaaagcacgttctatgggcaccactcccaccagaggccacccactgaaccaaagggaactagttga |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396227 |
cctggggaagctcctatgtgccatttcttccctgtaaagcatgttctatgggcaccactcccaccagaggccacccactgaaccaaagggaactagttga |
54396128 |
T |
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| Q |
417 |
tcatatttctatgtcattccctatgct |
443 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
54396127 |
tcatatttctatgtcattccctatgct |
54396101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 414
Target Start/End: Complemental strand, 54381640 - 54381246
Alignment:
| Q |
20 |
gaggccagatataacatccacacaactagctatcccacaacatcaggtgcacgtttgcagaactacaccattttgaaaatctcaaaggatatctatgctc |
119 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
54381640 |
gaggccagatataacattcacacaactagctatccgacaacatcaggtgtgcgtttgcaaaactacaccattttggaaatctcaaaggatatctatgctc |
54381541 |
T |
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| Q |
120 |
ctaaatgggtagcttgtcaccctaggccttacccttatgctctttactattgccactacctagacatagggagtaaggtcttcaaagttcttctaaaggg |
219 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||| |
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| T |
54381540 |
ctaaatgggtagcttgtcaccctagaccttacccttatgctctttactattgccactacctagacataggcagtaggatcttcaaagttcttctaagggg |
54381441 |
T |
|
| Q |
220 |
tcaatatggagacataatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaactacttggaataaagcct |
319 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54381440 |
tcaatatggagacatgatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaactacttggaatgaagcct |
54381341 |
T |
|
| Q |
320 |
ggggaagctcctatgtgccatttcttccctgtaaagcacgttctatgggcaccactcccaccagaggccacccactgaaccaaagggaactagtt |
414 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||||| | |||||||||||| |
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| T |
54381340 |
ggggaagctccactgtgtcatttcttccctgtaaagcacattgtatgggcgccactcccaccagaggccaccaactgaacaagagggaactagtt |
54381246 |
T |
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