View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17474_high_25 (Length: 310)
Name: NF17474_high_25
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 36458473 - 36458180
Alignment:
| Q |
1 |
atcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcggaaactctcatcaagccgcgtcagatagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458473 |
atcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcggaaactctcatcaagccgcgtcagatagtt |
36458374 |
T |
|
| Q |
101 |
tgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgcaggggtgttatttggtttagaagtgacagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36458373 |
tgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgcaggggtgttatttgggttagaagtgacagt |
36458274 |
T |
|
| Q |
201 |
ttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattactttaatgtctatattactactttagtt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458273 |
ttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattactttaatgtctatattactactttagtt |
36458180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 40874816 - 40874742
Alignment:
| Q |
70 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttatttt |
144 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||| ||||| || |||||||| |||| ||| | ||||||| |
|
|
| T |
40874816 |
ggaaagtctcatcaagctggatcagatagtttgttgacgtggcatgcatttaagaaaatgatggatacttatttt |
40874742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 40871718 - 40871658
Alignment:
| Q |
70 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatga |
130 |
Q |
| |
|
||||| || |||||||| | ||||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
40871718 |
ggaaagtcgcatcaagctggatcagatagtttgttgacatggcatgcatttaagaaaatga |
40871658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University