View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_high_28 (Length: 305)
Name: NF17474_high_28
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 3045886 - 3046161
Alignment:
| Q |
19 |
atattatttcatgtgggagtattgaaattcgtattcgatcgatttattaattgtctgtactaataagtgaaacatcaataatgtaaccactcttgaagaa |
118 |
Q |
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| T |
3045886 |
atattatttcatgtgggagtattgaaattcgtattcgatcgatttattaattgtctgtactaataagtgaaacatcaataatgtaaccactcttgaagaa |
3045985 |
T |
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| Q |
119 |
aatcaatttcatcttctaacgtttacttattttaggtcaagtaatcgtgtaatggttaaaaattcatattttaagttggggtgtgcacgatttgaaccct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||||| |
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| T |
3045986 |
aatcaatttcatcttctaacgtttacttattttaggtcaagtaattgtgtaatggttagaaattcatattttaaggtggggtgtgcacgattcgaaccct |
3046085 |
T |
|
| Q |
219 |
aactcttgtatatatttaacttcttaattagtgctttagatgcacttattagttaactctattatgtaatgttcat |
294 |
Q |
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||||||||||||||||||||||||||| ||||| ||| ||||| ||||||| ||||||||||||||||||||||| |
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| T |
3046086 |
aactcttgtatatatttaacttcttaaccagtgccttaaatgcatttattagctaactctattatgtaatgttcat |
3046161 |
T |
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