View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17474_high_39 (Length: 253)
Name: NF17474_high_39
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_high_39 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 9267701 - 9267942
Alignment:
| Q |
12 |
gattattcttgatcaaataagtctgcaagatgaattgtgagttaacttgtaaagtttaagaaactaaaaattgaaaaacataatatgacttggcactcac |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9267701 |
gattcttcttgatcaaataagtctgcaagatgaattgtgagttaacttgtaaagtttaagaaactaaaaattgaaaaacagaatatgacttggcactcac |
9267800 |
T |
|
| Q |
112 |
caatgcagctccgatgcagaaacttgtcgctcctttcagcaactctaccgcaatgctccgacgaagcaagcggtggcatccttggatgctttccaccgtg |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
9267801 |
caatgcagctccgatgcaaaaacttgtcgctcctttcagcaactctcccccaatgctccgacgaagcgagcggtagcatccctggatgctttccaccgtg |
9267900 |
T |
|
| Q |
212 |
agaggagttgtggttggaggagctagtggtggttgctgttcc |
253 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9267901 |
acaggagttgtggttggaggagctggtggtggttgctgttcc |
9267942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 9263422 - 9263662
Alignment:
| Q |
12 |
gattattcttgatcaaataagtctgcaagatgaattgtgagttaacttgtaaagtttaagaaactaaaaattgaaaaacataatatgacttggcactcac |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
9263422 |
gattcttcttgatcaaataagtctgcaagatgaattgtg-gttaacttgtaaagtttaagaaactaaaaattgaaaaacagaatatgacttggcacttac |
9263520 |
T |
|
| Q |
112 |
caatgcagctccgatgcagaaacttgtcgctcctttcagcaactctaccgcaatgctccgacgaagcaagcggtggcatccttggatgctttccaccgtg |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||||||||| |
|
|
| T |
9263521 |
caatgcagctccgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgacgaagcgagcggtagaatccctggatgctttccaccgtg |
9263620 |
T |
|
| Q |
212 |
agaggagttgtggttggaggagctagtggtggttgctgttcc |
253 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
9263621 |
agaggagttgtggttggaggagctgctggtggtggctgttcc |
9263662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 9263203 - 9262962
Alignment:
| Q |
12 |
gattattcttgatcaaataagtctgcaagatgaattgtgagttaacttgtaaagtttaagaaactaaaaattgaaaaacataatatgacttggcactcac |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
9263203 |
gattcttcttgatcaaataagtctgcaagatgaattgtgagttaacttgtaaagtttaagaaactaaaaattaaaaaacagaatatgaattggcactcac |
9263104 |
T |
|
| Q |
112 |
caatgcagctccgatgcagaaacttgtcgctcctttcagcaactctaccgcaatgctccgacgaagcaagcggtggcatccttggatgctttccaccgtg |
211 |
Q |
| |
|
||||| ||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||| |||| ||||||| |
|
|
| T |
9263103 |
caatgtagctcggatgaaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgacaaagcgagcggtagcatccctggattcttttcaccgtg |
9263004 |
T |
|
| Q |
212 |
agaggagttgtggttggaggagctagtggtggttgctgttcc |
253 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
9263003 |
agaggagttgtggttggaggagctgctagtggtggctgttcc |
9262962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 117 - 253
Target Start/End: Complemental strand, 9267632 - 9267496
Alignment:
| Q |
117 |
cagctccgatgcagaaacttgtcgctcctttcagcaactctaccgcaatgctccgacgaagcaagcggtggcatccttggatgctttccaccgtgagagg |
216 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| |||||| |||||||||| |||| |||| |||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
9267632 |
cagctctgatgcaaaaacttgtcgctcctttcagtaactcttccgcaatgcttcgactaagcgagcggtagcatccctggatgctttccaccttgagagg |
9267533 |
T |
|
| Q |
217 |
agttgtggttggaggagctagtggtggttgctgttcc |
253 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
9267532 |
agttgtggttggaggagctgctggtggtggctgttcc |
9267496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University