View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_high_4 (Length: 591)
Name: NF17474_high_4
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 11 - 574
Target Start/End: Complemental strand, 48527697 - 48527136
Alignment:
| Q |
11 |
aagaatatgaagaatatgaaatagttttagttgaagctttacgcgaacaatatgacagtcgagctctatgtgtttggttctctccaggaaggatgaattg |
110 |
Q |
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| T |
48527697 |
aagaatatgaagaatatgaaatagttttagttgaagctttacgcgaacaatatgacagtcgagctctatgtgtttggttctctccaggaaggatgaattg |
48527598 |
T |
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| Q |
111 |
gcagcaatatgtcttgcggcagattgattgtcacagtataacatggctggtttgatgaaagtaaatttgaggtcattgagaagatatgttaaccatttga |
210 |
Q |
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| T |
48527597 |
gcagcaatatgtcttgcggcggattgattgtcacagtataacatggctggtttgatgaaagtaaatttgaggtcattgagaagatatgttaaccatttga |
48527498 |
T |
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| Q |
211 |
tctcacaaattgttgattatatggatcgatagattttgaaattgtaccnnnnnnnnnnnnaagatttccaacatatgagtgagtcgcctaagaagatgca |
310 |
Q |
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| T |
48527497 |
tctcacaaattgttgattatatggatcgatagattttgaaattgtacctttttttttt--aagatttccagcatatgagtgagtcgcctaagaagatgca |
48527400 |
T |
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| Q |
311 |
aaaataactgattgattttcaagtgtctaggcagcttgatcaatct-----gagtcacaaaatgctttgatctgaatctaagatggaaaaaatattatat |
405 |
Q |
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| T |
48527399 |
aaaataactgattgattttcaagtgtctaggcagcttgatcaatctaatctgagtcacaaaatgctttgatctgaatctaagatggaaaaaatattc--- |
48527303 |
T |
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| Q |
406 |
ttattgtgatggagagatttttaggtatagtatttgaatggctgcttgtagatgttgtgctgtactctgatggaacttttttgattaaatactctatcct |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
48527302 |
--attgtgatggagagatttttaggtatagtatttgaatggctgcttgtggatgttgtgctgtactctgatggaacttttttgcttcaatactctatcct |
48527205 |
T |
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| Q |
506 |
aagagaccctttatcagtatttgctcttaactctaatatatttttcttgcttaaactcagatactttat |
574 |
Q |
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| T |
48527204 |
aagagaccctttatcagtatttgctcttaactctaatatatttttcttgcttaaactcagatactttat |
48527136 |
T |
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