View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17474_high_40 (Length: 251)

Name: NF17474_high_40
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17474_high_40
NF17474_high_40
[»] chr8 (11 HSPs)
chr8 (121-251)||(39065466-39065590)
chr8 (186-251)||(28462534-28462600)
chr8 (160-248)||(39209327-39209417)
chr8 (194-244)||(39534137-39534187)
chr8 (186-251)||(41675662-41675727)
chr8 (207-251)||(14110626-14110670)
chr8 (185-248)||(44648928-44648991)
chr8 (193-251)||(41726953-41727011)
chr8 (199-251)||(900237-900290)
chr8 (187-236)||(13873769-13873818)
chr8 (186-251)||(29795562-29795627)
[»] chr3 (12 HSPs)
chr3 (158-251)||(15671079-15671173)
chr3 (156-251)||(44291197-44291286)
chr3 (184-251)||(42163595-42163663)
chr3 (186-251)||(44041315-44041381)
chr3 (190-251)||(49711001-49711062)
chr3 (196-251)||(43652470-43652525)
chr3 (194-251)||(23208143-23208201)
chr3 (188-251)||(27144056-27144120)
chr3 (195-248)||(43014707-43014761)
chr3 (214-251)||(43862998-43863035)
chr3 (186-251)||(17109525-17109591)
chr3 (186-251)||(35322066-35322129)
[»] scaffold1372 (2 HSPs)
scaffold1372 (184-251)||(1260-1327)
scaffold1372 (218-247)||(1376-1405)
[»] chr1 (16 HSPs)
chr1 (184-251)||(48282880-48282947)
chr1 (189-251)||(20471326-20471388)
chr1 (189-251)||(20560149-20560211)
chr1 (190-251)||(30627610-30627671)
chr1 (189-251)||(33827818-33827881)
chr1 (189-251)||(33840084-33840147)
chr1 (188-251)||(31884453-31884516)
chr1 (187-251)||(40391209-40391274)
chr1 (193-251)||(26855824-26855883)
chr1 (208-251)||(50127361-50127404)
chr1 (184-250)||(19066918-19066984)
chr1 (184-250)||(19114808-19114874)
chr1 (191-251)||(15419646-15419707)
chr1 (191-251)||(50468802-50468863)
chr1 (193-239)||(18786447-18786493)
chr1 (195-236)||(34347227-34347268)
[»] chr7 (9 HSPs)
chr7 (185-250)||(22035790-22035856)
chr7 (196-251)||(41434758-41434813)
chr7 (184-251)||(45907023-45907090)
chr7 (188-251)||(16861734-16861797)
chr7 (184-237)||(27364663-27364717)
chr7 (190-246)||(19689561-19689618)
chr7 (187-236)||(34993090-34993139)
chr7 (195-251)||(8117444-8117500)
chr7 (188-248)||(21798857-21798917)
[»] chr5 (8 HSPs)
chr5 (185-251)||(14863393-14863459)
chr5 (187-251)||(2611140-2611205)
chr5 (184-251)||(7609529-7609596)
chr5 (193-251)||(11320182-11320240)
chr5 (186-250)||(12187241-12187305)
chr5 (193-251)||(21052626-21052684)
chr5 (184-248)||(35185315-35185380)
chr5 (184-238)||(18677915-18677970)
[»] chr6 (3 HSPs)
chr6 (188-251)||(17506323-17506386)
chr6 (191-251)||(21809802-21809862)
chr6 (196-249)||(4803215-4803268)
[»] chr4 (9 HSPs)
chr4 (185-251)||(19147138-19147204)
chr4 (189-251)||(47397662-47397724)
chr4 (191-251)||(31241947-31242008)
chr4 (190-251)||(31647778-31647839)
chr4 (188-251)||(38319533-38319597)
chr4 (190-237)||(16004449-16004496)
chr4 (200-251)||(20542600-20542651)
chr4 (201-251)||(38320124-38320175)
chr4 (157-203)||(48743577-48743622)
[»] scaffold0034 (1 HSPs)
scaffold0034 (184-251)||(22413-22480)
[»] scaffold0006 (1 HSPs)
scaffold0006 (185-251)||(38858-38924)
[»] chr2 (6 HSPs)
chr2 (190-251)||(18243299-18243361)
chr2 (186-248)||(40574134-40574196)
chr2 (190-239)||(23760588-23760637)
chr2 (184-251)||(19889802-19889870)
chr2 (200-248)||(21646482-21646531)
chr2 (146-203)||(31807729-31807785)
[»] scaffold0078 (1 HSPs)
scaffold0078 (195-251)||(861-918)
[»] scaffold0117 (1 HSPs)
scaffold0117 (203-251)||(16838-16886)
[»] scaffold0886 (1 HSPs)
scaffold0886 (184-251)||(1094-1161)
[»] scaffold0068 (1 HSPs)
scaffold0068 (184-250)||(52070-52136)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 251
Target Start/End: Original strand, 39065466 - 39065590
Alignment:
Q  121 gttaactcacatccctgatacactagttaaaaaacaa-gggtcttgttgaccagtgccccggggccggggcactggttaaggaatctataaatataattt 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||     ||||||||||||||||  |||||||||| |||||    
T  39065466 gttaactcacatccctgatacactagttaaaaaacaaggggtcttgttgaccagtgcttcg-----ggggcactggttaagg--tctataaatagaattt 39065558  T
Q  220 ctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||  |||||||||||||||||||||||    
T  39065559 ctgtcttaaaaatataaactgtcactttttat 39065590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 28462534 - 28462600
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttct-gtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||||| ||||||||||||| ||||| | |||||||||||||||||| |||||||||||    
T  28462534 ggggcactggttaaagaatctataaatagaattttttgtcttggaaatataaactatcactttttat 28462600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 39209327 - 39209417
Alignment:
Q  160 gtcttgttgaccagtgccccggggccgg-ggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttt 248  Q
    |||||||| |||||||| || ||| ||| |||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||    
T  39209327 gtcttgttaaccagtgctcctgggacggtggcactagttaaggaatttataaatagaattttctgttttggaaatataaactgtcactttt 39209417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 39534137 - 39534187
Alignment:
Q  194 ggttaaggaatctataaatataatttctgtcttggaaatataaactgtcac 244  Q
    |||||| |||||||||| || ||||||||||||| ||||||||||||||||    
T  39534137 ggttaaagaatctataattagaatttctgtcttgaaaatataaactgtcac 39534187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 41675662 - 41675727
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||| | |||||||||||| ||||| ||||||||| ||| ||||||||||| ||| |||||||    
T  41675662 ggggcaccgattaaggaatctacaaatagaatttctgttttgaaaatataaactatcattttttat 41675727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 14110626 - 14110670
Alignment:
Q  207 ataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||||    
T  14110626 ataaatataatttttgtcttagaaatataaaccgtcactttttat 14110670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 44648928 - 44648991
Alignment:
Q  185 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttt 248  Q
    ||||||| ||||||||||||||| ||||| || || ||||||| ||||||||| ||| ||||||    
T  44648928 cggggcaatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttactttt 44648991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 41727011 - 41726953
Alignment:
Q  193 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||||| ||||| || || ||||||||||||||||| ||| | |||||||    
T  41727011 tggttaaggaatctacaaataaaaattttgtcttggaaatataaaatgttattttttat 41726953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 900237 - 900290
Alignment:
Q  199 aggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttat 251  Q
    ||||| ||||||||||||||| |||||||| |||| |||||||||| |||||||    
T  900237 aggaaactataaatataattttctgtcttgaaaatttaaactgtcattttttat 900290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 13873818 - 13873769
Alignment:
Q  187 gggcactggttaaggaatctataaatataatttctgtcttggaaatataa 236  Q
    ||||| || |||||||||||||||||| ||||| |||||| |||||||||    
T  13873818 gggcaatgattaaggaatctataaataaaatttttgtcttagaaatataa 13873769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 29795627 - 29795562
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||| ||||||||||||| | ||||| ||||| | ||||  || ||||||||||||||||||||    
T  29795627 ggggcattggttaaggaatccaaaaatagaatttttatcttaaaactataaactgtcactttttat 29795562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 15671079 - 15671173
Alignment:
Q  158 gggtcttgttgaccagtgcccc-ggggccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||    
T  15671079 gggtcttgttaaccagtgcccccggggcgggggcactggttaaggaatctataaataaaatttttgtcttcgaaatataaactgtcactttttat 15671173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 44291197 - 44291286
Alignment:
Q  156 aagggtcttgttgaccagtgccccggggccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||| |||||||||||||      |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44291197 aagggtcttgttaaccagtgccccgg------ggcactggttaaggaatctataaatagaatttctgtcttggaaatataaactgtcactttttat 44291286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 42163595 - 42163663
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||||||    
T  42163595 ccggggcactggttaaggaatctattaatagaattttctgtcttggaaatataaaccgtcactttttat 42163663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 44041315 - 44041381
Alignment:
Q  186 ggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  44041315 ggggcactggttaatgaatctataaatagaattttctgtcttggtaatataaactgtcactttttat 44041381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 49711062 - 49711001
Alignment:
Q  190 cactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| ||| | |||||||    
T  49711062 cactggttaaggaatctataaatagaatttctgtcttagaaatataaaatgttattttttat 49711001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 43652470 - 43652525
Alignment:
Q  196 ttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||| |||||||    
T  43652470 ttaaggaatctataaataaaatttctatcttggaaatataatctgtcattttttat 43652525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 23208143 - 23208201
Alignment:
Q  194 ggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  23208143 ggttaagaaatctataaatagaattttctgtcttgaaaatataaactgtcactttttat 23208201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 27144120 - 27144056
Alignment:
Q  188 ggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||| |||||||||||| || ||||||| || |||||||||||||| |||||||||    
T  27144120 ggcactggttaagaaatctataaatagaattttctgtattagaaatataaactgtgactttttat 27144056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 43014761 - 43014707
Alignment:
Q  195 gttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttt 248  Q
    ||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  43014761 gttaaagaatttataaatataattttctgtcttggaaatataaattgtcactttt 43014707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 43863035 - 43862998
Alignment:
Q  214 taatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||||||||||||||||||||||| |||||    
T  43863035 taatttctgtcttggaaatataaactgtcactctttat 43862998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 17109525 - 17109591
Alignment:
Q  186 ggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||| ||||||| ||| |||||||| ||||| || ||||||||||||||||||| || ||||||    
T  17109525 ggggcacgggttaagaaatttataaatagaattttctatcttggaaatataaactgtaacattttat 17109591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 35322129 - 35322066
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||| |||||||  |||||||||||| ||||| |||||| |||||||||||| |||||||||||    
T  35322129 ggggcattggttaaaaaatctataaatagaattt-tgtcttagaaatataaact-tcactttttat 35322066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 1260 - 1327
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1260 ccggggcacgggttaaggaatctataaatagaatttctgtcttggaaatataaactgtcactttttat 1327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 1376 - 1405
Alignment:
Q  218 ttctgtcttggaaatataaactgtcacttt 247  Q
    ||||||||||||||||||||||||||||||    
T  1376 ttctgtcttggaaatataaactgtcacttt 1405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 48282880 - 48282947
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  48282880 ccggggcactggttaaggaatctataaatagaatttctgtcttgaaaatataatctgtcactttttat 48282947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 20471326 - 20471388
Alignment:
Q  189 gcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||| |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  20471326 gcactggttaagaaatctataaatataattgttgtcttagaaatataaactgtcactttttat 20471388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 20560211 - 20560149
Alignment:
Q  189 gcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||| |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  20560211 gcactggttaagaaatctataaatataattgttgtcttagaaatataaactgtcactttttat 20560149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 30627610 - 30627671
Alignment:
Q  190 cactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  30627610 cactgattaaggaatctataaatagaatttatgtcttggaaatataacctgtcactttttat 30627671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 33827818 - 33827881
Alignment:
Q  189 gcactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||  |||||||||||    
T  33827818 gcactggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttat 33827881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 33840147 - 33840084
Alignment:
Q  189 gcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||  |||||||||||    
T  33840147 gcactggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttat 33840084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 31884453 - 31884516
Alignment:
Q  188 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||| |||||| |||||||||||| ||||||| |||||||||||||||||| || |||||||    
T  31884453 ggcacttgttaagaaatctataaatagaatttctatcttggaaatataaactgacattttttat 31884516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 40391209 - 40391274
Alignment:
Q  187 gggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||| ||||| |||||||||||  ||||| |||||||| |||||||||||||||||||||||    
T  40391209 gggcactgattaagaaatctataaatcgaattttctgtcttgaaaatataaactgtcactttttat 40391274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 26855824 - 26855883
Alignment:
Q  193 tggttaaggaatctataaatataatttct-gtcttggaaatataaactgtcactttttat 251  Q
    ||||||| ||||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  26855824 tggttaaagaatctataaatagaattttttgtcttggaaatataatctgtcactttttat 26855883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 50127361 - 50127404
Alignment:
Q  208 taaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||| ||||||||||||||||||||||||||||| |||||||    
T  50127361 taaatagaatttctgtcttggaaatataaactgtcattttttat 50127404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 19066984 - 19066918
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 250  Q
    |||| ||||| |||||| |||||||||||| ||||  |||||| |||||||||| ||||||||||||    
T  19066984 ccggagcactagttaagaaatctataaatagaattgttgtcttagaaatataaattgtcacttttta 19066918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 19114874 - 19114808
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 250  Q
    |||| ||||| |||||| |||||||||||| ||||  |||||| |||||||||| ||||||||||||    
T  19114874 ccggagcactagttaagaaatctataaatagaattgttgtcttagaaatataaattgtcacttttta 19114808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 15419646 - 15419707
Alignment:
Q  191 actggttaaggaatctataaatataatttct-gtcttggaaatataaactgtcactttttat 251  Q
    ||||||||| ||||||||||||| ||||| | || ||||||||||||||||| |||||||||    
T  15419646 actggttaatgaatctataaatagaattttttgtattggaaatataaactgttactttttat 15419707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 50468802 - 50468863
Alignment:
Q  191 actggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||||||||||||| || ||||| |||| ||||||||| |||||| |||||||    
T  50468802 actggttaaggaatctataaataaaattttctatcttagaaatataacctgtcattttttat 50468863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 18786447 - 18786493
Alignment:
Q  193 tggttaaggaatctataaatataatttctgtcttggaaatataaact 239  Q
    |||||||||||||||||| || || || |||||||||||||||||||    
T  18786447 tggttaaggaatctataagtaaaacttttgtcttggaaatataaact 18786493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 34347227 - 34347268
Alignment:
Q  195 gttaaggaatctataaatataatttctgtcttggaaatataa 236  Q
    ||||| |||||||||||||||| || ||||||||||||||||    
T  34347227 gttaaagaatctataaatataaattttgtcttggaaatataa 34347268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 22035856 - 22035790
Alignment:
Q  185 cggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcacttttta 250  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  22035856 cggggcactggttaatgaatctataaatagaattttctgtcttggaaatataaactgtcacttttta 22035790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 41434813 - 41434758
Alignment:
Q  196 ttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41434813 ttaaagaatctataaatataatttctgtcttagaaatataaactgtcactttttat 41434758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 45907023 - 45907090
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||| |||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||    
T  45907023 ccggggcacgggttaaggaatctataaatagattttttgtcttgtaaatataaactgtcactttttat 45907090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 16861797 - 16861734
Alignment:
Q  188 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||    
T  16861797 ggcaccggttaagaaatctataaatagaatttatgtcttggaaatataaactgtcattttttat 16861734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 27364717 - 27364663
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaa 237  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||||||||    
T  27364717 ccggggcactggttaaggaatctataaatagaattttatgtcttggaaatataaa 27364663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 19689618 - 19689561
Alignment:
Q  190 cactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactt 246  Q
    ||||| |||||||||||||||||| || ||||| ||||| ||||||||||| ||||||    
T  19689618 cactgattaaggaatctataaatacaactttctatcttgtaaatataaactatcactt 19689561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 34993090 - 34993139
Alignment:
Q  187 gggcactggttaaggaatctataaatataatttctgtcttggaaatataa 236  Q
    ||||| ||||||||||||||| |||||||| || ||||||| ||||||||    
T  34993090 gggcaatggttaaggaatctacaaatataaattttgtcttgaaaatataa 34993139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 8117444 - 8117500
Alignment:
Q  195 gttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||| |||||||||||||| ||||| ||||||| ||||||||| ||| | |||||||    
T  8117444 gttatggaatctataaatagaatttatgtcttgaaaatataaattgttattttttat 8117500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 21798917 - 21798857
Alignment:
Q  188 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttt 248  Q
    ||||| ||||||| |||| | ||||| ||||| |||||||||| |||||||||||| ||||    
T  21798917 ggcacgggttaagaaatccaaaaatagaatttatgtcttggaattataaactgtcattttt 21798857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 14863459 - 14863393
Alignment:
Q  185 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  14863459 cgggacactggttaaagaatctataaatataatttatgtcttgaaaatataaactgtcactttttat 14863393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 2611140 - 2611205
Alignment:
Q  187 gggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||    
T  2611140 gggcactggttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttat 2611205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 7609529 - 7609596
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||| ||||||||||||||| || ||||||||| ||||||||||||||| ||| |||||||    
T  7609529 ccggggcactgattaaggaatctataattagaatttctgttttggaaatataaactatcattttttat 7609596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 11320240 - 11320182
Alignment:
Q  193 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||||||||||||||||    
T  11320240 tggttaaggaatctataattaaaatttctatcttagaaatataaactgtcactttttat 11320182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 12187305 - 12187241
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 250  Q
    |||||| ||||||| ||||||| ||||| ||||| |||||||||||||||||| |||||||||||    
T  12187305 ggggcattggttaaagaatctacaaatagaatttttgtcttggaaatataaacggtcacttttta 12187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 21052626 - 21052684
Alignment:
Q  193 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||| |||||||| ||||||  ||||| |||||||||||||||||||||||    
T  21052626 tggttaaggaatttataaataaaatttccatcttgcaaatataaactgtcactttttat 21052684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 35185380 - 35185315
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttc-tgtcttggaaatataaactgtcactttt 248  Q
    |||| ||||||||||| ||||||||||||| |||||  ||||||| ||||||||||||||||||||    
T  35185380 ccggagcactggttaaagaatctataaatagaattttatgtcttgaaaatataaactgtcactttt 35185315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 18677915 - 18677970
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaac 238  Q
    |||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||||    
T  18677915 ccggagcactggttaaggaatctataaatagaattttctatcttgaaaatataaac 18677970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 17506386 - 17506323
Alignment:
Q  188 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||| |||||||||||||||||| | | |||||||||||||||||||||||||||    
T  17506386 ggcactggttaagaaatctataaatataatttatattttggaaatataaactgtcactttttat 17506323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 21809802 - 21809862
Alignment:
Q  191 actggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||| |||||||||||| ||||  |||||| |||||||||| |||||||||||||    
T  21809802 actggttaagaaatctataaatagaattgttgtcttagaaatataaattgtcactttttat 21809862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 4803268 - 4803215
Alignment:
Q  196 ttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttt 249  Q
    |||| ||||||||||||| ||||||||| || |||||||||||||  |||||||    
T  4803268 ttaaagaatctataaatagaatttctgtgtttgaaatataaactgctacttttt 4803215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 19147138 - 19147204
Alignment:
Q  185 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||| ||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  19147138 cgggacactggttaagaaatctataagtagaatttctgtcttgaaaatataaactgtcactttttat 19147204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 47397724 - 47397662
Alignment:
Q  189 gcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||    
T  47397724 gcactggttaaggaatctataaatagaatttctattttagaaatataaactgtcactttttat 47397662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 31241947 - 31242008
Alignment:
Q  191 actggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||    
T  31241947 actggttaaggaatctataaatagaattttctgtcttgaaaatataaacggtcactttttat 31242008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 31647839 - 31647778
Alignment:
Q  190 cactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||| |||| ||||||||||||| |||||||||||| |||||||||||| |||||||||||    
T  31647839 cactgattaaagaatctataaatagaatttctgtcttagaaatataaactatcactttttat 31647778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 38319533 - 38319597
Alignment:
Q  188 ggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttat 251  Q
    |||| ||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||    
T  38319533 ggcattggttaaggaatctataaatagaattttctgttttgaaaatataaactgtcactttttat 38319597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 16004496 - 16004449
Alignment:
Q  190 cactggttaaggaatctataaatataatttctgtcttggaaatataaa 237  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  16004496 cactgcttaagaaatctataaatagaatttctgtcttggaaatataaa 16004449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 20542600 - 20542651
Alignment:
Q  200 ggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||| ||||||| ||||||| ||||| |||||||||||||||||||||||    
T  20542600 ggaatccataaataaaatttctatcttgtaaatataaactgtcactttttat 20542651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 38320124 - 38320175
Alignment:
Q  201 gaatctataaatataattt-ctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  38320124 gaatctataaatagaattttctgtcttggaaatataaactgtcacttcttat 38320175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 48743622 - 48743577
Alignment:
Q  157 agggtcttgttgaccagtgccccggggccggggcactggttaaggaa 203  Q
    ||||||||||| ||||||||||||||| | |||||||||||||||||    
T  48743622 agggtcttgttaaccagtgccccgggggc-gggcactggttaaggaa 48743577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 22413 - 22480
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||| ||||| ||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||    
T  22413 ccgggacactgattaaggaatctataaatataacttttgtgttggaaatataaaccgtcactttttat 22480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 38924 - 38858
Alignment:
Q  185 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||| |||||||||  |||||||||||| ||||| | ||||||||||||||||||||| |||||||    
T  38924 cggggtactggttaaaaaatctataaatagaatttatatcttggaaatataaactgtcattttttat 38858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 18243299 - 18243361
Alignment:
Q  190 cactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||||||||||||||| || ||| ||| ||||||||||||||| |||||||||||    
T  18243299 cactggttaaggaatctataaataaaattttttgttttggaaatataaactttcactttttat 18243361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 40574134 - 40574196
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttt 248  Q
    |||||||||||||||||||||| ||||| || || ||||||||||||||||| ||| ||||||    
T  40574134 ggggcactggttaaggaatctacaaatagaaattttgtcttggaaatataaaatgtaactttt 40574196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 23760588 - 23760637
Alignment:
Q  190 cactggttaaggaatctataaatataatttctgtcttggaaatataaact 239  Q
    |||||||||| ||||||||||||||||||| ||||||  |||||||||||    
T  23760588 cactggttaacgaatctataaatataatttatgtcttaaaaatataaact 23760637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 19889870 - 19889802
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||||||| |||||||||||| || ||| ||| ||||||||||||  |||||| ||||||    
T  19889870 ccggggcactggttaagaaatctataaatagaattttatgttttggaaatataatatgtcaccttttat 19889802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 21646482 - 21646531
Alignment:
Q  200 ggaatctataaatataattt-ctgtcttggaaatataaactgtcactttt 248  Q
    |||||||||| ||| ||||| |||||||||||||||||| ||||||||||    
T  21646482 ggaatctatacatagaattttctgtcttggaaatataaagtgtcactttt 21646531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 31807729 - 31807785
Alignment:
Q  146 gttaaaaaacaagggtcttgttgaccagtgccccggggccggggcactggttaaggaa 203  Q
    ||||||||| || |||| |||| |||||||||||| || |||||||||||||||||||    
T  31807729 gttaaaaaaaaaaggtcatgttaaccagtgccccgtgg-cggggcactggttaaggaa 31807785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 861 - 918
Alignment:
Q  195 gttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||    
T  861 gttaaggaatctataaatagaattttctgtcttggaaatataaactatcattttttat 918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 16838 - 16886
Alignment:
Q  203 atctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||||||    
T  16838 atctataaatagagtttctgtcttgaaaatataaactgtcactttttat 16886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 1094 - 1161
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||| ||||||| ||| ||| |||||||| ||||| | ||||| |||||||||||||||||||||||    
T  1094 ccgggacactggtcaagaaatttataaatagaatttttttcttgaaaatataaactgtcactttttat 1161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 52136 - 52070
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 250  Q
    |||| |||| ||||||| |||||||||||| ||||  |||||| |||||||||| ||||| ||||||    
T  52136 ccggagcacgggttaagaaatctataaatagaattgttgtcttagaaatataaattgtcatttttta 52070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University