View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17474_high_49 (Length: 230)
Name: NF17474_high_49
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_high_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 34605320 - 34605522
Alignment:
| Q |
12 |
cagagagcataactaatttgttggattctgtcaataagtcgagtatttcttatatggaaggagctttaggaatcaaaacatactactcagaaaacagcaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34605320 |
cagagagcataactaatttgttggattctgtcaataagtcgagtatttcttatatggaaggagctttaggaatcaaaacatactactcagaaaacagcaa |
34605419 |
T |
|
| Q |
112 |
tgaatataaagattttgaggttcagtttaggaaagcttttcgagacaagaatcctgacgaagataacagggatccgggattttatgctttgcaagcatat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34605420 |
tgaatataaagattttgaggttcagtttaggaaagcttttcgagacaagaatcctgacgaagataacagggatccgggattttatgctttgcaagcatat |
34605519 |
T |
|
| Q |
212 |
gac |
214 |
Q |
| |
|
||| |
|
|
| T |
34605520 |
gac |
34605522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 4488811 - 4488694
Alignment:
| Q |
14 |
gagagcataactaatttgttggattctgtcaataagtcgagtatttcttatatggaaggagctttaggaatcaaaacatactactcagaaaacagcaatg |
113 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||||||| ||| |||||||||||||| ||||||||||| || || |||||||| |||| |||| | |
|
|
| T |
4488811 |
gagagcatagctaatttgctggactctgtcaataagtctgctatatcttatatggaaggtgctttaggaattaagacctactactcggaaagaagcaggg |
4488712 |
T |
|
| Q |
114 |
aatataaagattttgagg |
131 |
Q |
| |
|
| |||||||| ||||||| |
|
|
| T |
4488711 |
agtataaagaatttgagg |
4488694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 4483843 - 4483753
Alignment:
| Q |
14 |
gagagcataactaatttgttggattctgtcaataagtcgagtatttcttatatggaaggagctttaggaatcaaaacatactactcagaaa |
104 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||||||| ||| |||||||||||||| ||||||||||| || || |||||||| |||| |
|
|
| T |
4483843 |
gagagcatagctaatttgctggactctgtcaataagtctgctatatcttatatggaaggtgctttaggaattaagacctactactcggaaa |
4483753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University