View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17474_high_5 (Length: 583)

Name: NF17474_high_5
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17474_high_5
NF17474_high_5
[»] chr2 (15 HSPs)
chr2 (22-274)||(10880459-10880711)
chr2 (357-574)||(36670537-36670755)
chr2 (357-574)||(36675085-36675303)
chr2 (357-574)||(8050872-8051090)
chr2 (357-574)||(8055425-8055643)
chr2 (357-478)||(12999469-12999588)
chr2 (357-433)||(35950486-35950562)
chr2 (357-478)||(41093857-41093975)
chr2 (357-401)||(6463506-6463550)
chr2 (357-413)||(13271042-13271097)
chr2 (389-478)||(34590280-34590365)
chr2 (405-478)||(6463443-6463514)
chr2 (520-572)||(6463345-6463397)
chr2 (372-424)||(29767989-29768041)
chr2 (405-478)||(13270990-13271061)
[»] scaffold0440 (2 HSPs)
scaffold0440 (357-574)||(7540-7757)
scaffold0440 (357-519)||(3014-3177)
[»] scaffold0044 (2 HSPs)
scaffold0044 (357-574)||(44771-44988)
scaffold0044 (357-574)||(49351-49568)
[»] chr5 (25 HSPs)
chr5 (357-574)||(16794142-16794360)
chr5 (357-574)||(16798703-16798921)
chr5 (357-574)||(12018765-12018984)
chr5 (357-574)||(12023323-12023542)
chr5 (357-574)||(7099280-7099497)
chr5 (357-574)||(7103849-7104066)
chr5 (357-574)||(37682070-37682277)
chr5 (415-574)||(37658814-37658973)
chr5 (357-474)||(32485994-32486109)
chr5 (357-478)||(30695326-30695445)
chr5 (357-478)||(19502341-19502461)
chr5 (357-478)||(26336810-26336930)
chr5 (357-428)||(40371788-40371859)
chr5 (357-478)||(43384985-43385104)
chr5 (375-478)||(20830333-20830434)
chr5 (405-478)||(36632383-36632454)
chr5 (437-519)||(5733069-5733154)
chr5 (375-440)||(20808681-20808746)
chr5 (357-443)||(10277237-10277323)
chr5 (357-478)||(10274579-10274697)
chr5 (405-478)||(40367617-40367688)
chr5 (358-413)||(37658767-37658823)
chr5 (357-401)||(40367680-40367724)
chr5 (520-574)||(30695491-30695545)
chr5 (520-574)||(40367517-40367570)
[»] chr7 (13 HSPs)
chr7 (357-574)||(7939989-7940206)
chr7 (357-574)||(7944542-7944759)
chr7 (357-574)||(27761430-27761649)
chr7 (357-574)||(27756879-27757098)
chr7 (357-574)||(22901188-22901407)
chr7 (357-478)||(35705667-35705787)
chr7 (357-478)||(47419583-47419702)
chr7 (391-478)||(733671-733756)
chr7 (405-478)||(7466528-7466599)
chr7 (391-474)||(8675031-8675113)
chr7 (375-476)||(13828109-13828208)
chr7 (357-401)||(7466591-7466635)
chr7 (357-433)||(37355593-37355670)
[»] chr3 (14 HSPs)
chr3 (357-574)||(54171829-54172047)
chr3 (357-574)||(54167249-54167467)
chr3 (357-574)||(21847144-21847362)
chr3 (357-574)||(21850234-21850452)
chr3 (357-478)||(43547757-43547877)
chr3 (357-478)||(9105308-9105427)
chr3 (357-478)||(11004408-11004527)
chr3 (357-475)||(9697620-9697737)
chr3 (385-476)||(755891-755981)
chr3 (357-478)||(39399128-39399246)
chr3 (400-478)||(43554645-43554721)
chr3 (370-433)||(38175833-38175896)
chr3 (394-427)||(755824-755857)
chr3 (357-401)||(43554326-43554371)
[»] chr4 (19 HSPs)
chr4 (357-574)||(3770876-3771093)
chr4 (357-574)||(44147057-44147273)
chr4 (357-574)||(44151592-44151808)
chr4 (357-574)||(31670124-31670341)
chr4 (358-478)||(10317068-10317186)
chr4 (357-478)||(8892625-8892744)
chr4 (357-478)||(53722040-53722159)
chr4 (357-475)||(27186176-27186295)
chr4 (357-413)||(43683731-43683787)
chr4 (405-478)||(50627947-50628018)
chr4 (357-478)||(31359184-31359302)
chr4 (372-427)||(45976222-45976277)
chr4 (357-401)||(35842803-35842847)
chr4 (357-433)||(41884958-41885033)
chr4 (415-478)||(43683679-43683740)
chr4 (358-478)||(53785880-53785998)
chr4 (483-519)||(31286093-31286129)
chr4 (420-478)||(35842843-35842899)
chr4 (361-478)||(49274518-49274631)
[»] chr8 (16 HSPs)
chr8 (357-574)||(197591-197807)
chr8 (357-574)||(202109-202325)
chr8 (357-574)||(312428-312644)
chr8 (357-574)||(316946-317162)
chr8 (357-574)||(43807391-43807607)
chr8 (357-574)||(43811950-43812166)
chr8 (357-478)||(42234699-42234818)
chr8 (357-478)||(28644595-28644714)
chr8 (357-478)||(33071951-33072070)
chr8 (357-574)||(30410235-30410453)
chr8 (376-574)||(30405726-30405925)
chr8 (357-424)||(41949835-41949902)
chr8 (357-420)||(41945372-41945434)
chr8 (405-478)||(38757072-38757143)
chr8 (437-519)||(1286730-1286815)
chr8 (521-574)||(28644761-28644813)
[»] chr6 (14 HSPs)
chr6 (357-478)||(17096279-17096398)
chr6 (357-478)||(17895728-17895847)
chr6 (357-478)||(8315508-8315628)
chr6 (357-475)||(8320050-8320166)
chr6 (357-478)||(17779948-17780067)
chr6 (358-478)||(14531792-14531910)
chr6 (357-478)||(27552115-27552234)
chr6 (357-477)||(17886854-17886966)
chr6 (357-413)||(27574795-27574851)
chr6 (362-478)||(6440866-6440979)
chr6 (372-426)||(17163676-17163730)
chr6 (372-427)||(7888212-7888268)
chr6 (508-563)||(8319960-8320014)
chr6 (372-426)||(17159646-17159700)
[»] chr1 (9 HSPs)
chr1 (357-478)||(39793864-39793983)
chr1 (357-478)||(43591826-43591945)
chr1 (357-478)||(16588483-16588602)
chr1 (437-521)||(41879932-41880019)
chr1 (357-478)||(10504469-10504587)
chr1 (405-574)||(26311591-26311760)
chr1 (405-574)||(26316082-26316251)
chr1 (437-521)||(36164335-36164422)
chr1 (508-563)||(39794016-39794070)
[»] scaffold0006 (1 HSPs)
scaffold0006 (358-426)||(60201-60270)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 274
Target Start/End: Original strand, 10880459 - 10880711
Alignment:
Q  22 aaactcattataaaccttatattttaccaatgcgaccgataaattgaaaaatcttattcaatatatcaaatcgacaaattattataaaaattcaactcat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10880459 aaactcattataaaccttatattttaccaatgcgaccgataaattgaaaattcttattcaatatatcaaatcgacaaattattataaaaattcaactcat 10880558  T
Q  122 gttttgtagtcccaaatgccacctgagttgaagaatatccacctctttttactactaaaaacacaatttttatattttggaataactcattttgattatt 221  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10880559 gttttgtagtcccaaatcccacctgagttgaagaatatccacctctttttactactaaaaacacaatttttatattttggaataactcattttgattatt 10880658  T
Q  222 gtgtaacaaggtaattcttcaatatattaaaattttatgtctttgattataca 274  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10880659 gtgtaacaaggtaattcttcaatatattaaaatttcatgtctttgattataca 10880711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 36670537 - 36670755
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36670537 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 36670636  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36670637 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcattatatagaatcaataaagatcatttacaattttcat 36670736  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  36670737 cataactttcttctctctc 36670755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 36675085 - 36675303
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36675085 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 36675184  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36675185 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcattatatagaatcaataaagatcatttacaattttcat 36675284  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  36675285 cataactttcttctctctc 36675303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 8050872 - 8051090
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| | ||||| |   |||||||||||    
T  8050872 gataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctagagtttgtt 8050969  T
Q  457 aaattgcttgtgcttcaagcaa--tgtttaga-cttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttc 553  Q
    | ||||||||||||||||||||  |   ||||  |||||||||||     |   |||||||||   ||||||||||||||||||||| ||||||||||||    
T  8050970 acattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtacatttcatatgtagaatcaataaagatcttttacaattttc 8051069  T
Q  554 atcataactttcttctctctc 574  Q
    |||||||||||||||||||||    
T  8051070 atcataactttcttctctctc 8051090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 8055425 - 8055643
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| | | |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |   |||||||||||    
T  8055425 gataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgttagaggttagtagataagat--ctagagtttgtt 8055522  T
Q  457 aaattgcttgtgcttcaagcaa--tgtttaga-cttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttc 553  Q
    | ||||||||||||||||||||  |   ||||  |||||||||||     |   |||||||||   ||||||||||||||||||||| ||||||||||||    
T  8055523 acattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcatatgtagaatcaataaagatcttttacaattttc 8055622  T
Q  554 atcataactttcttctctctc 574  Q
    |||||||||||||||||||||    
T  8055623 atcataactttcttctctctc 8055643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 12999588 - 12999469
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||||||    
T  12999588 gataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtttgtt 12999491  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||| ||||||||||||||||    
T  12999490 acattacttgtgcttcaagcaa 12999469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 357 - 433
Target Start/End: Complemental strand, 35950562 - 35950486
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagc 433  Q
    |||||||||||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| ||||||| |||||    
T  35950562 gataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagttagagattagc 35950486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 41093857 - 41093975
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||||||||| |||||||||||| | || | || ||||||||||||| |||||||||| || ||||||| |||||  |||||   ||||| |||||||    
T  41093857 gataatcacaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagttagagattagctcataag---gttagggtttgtt 41093953  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    |  | |||||| ||||||||||    
T  41093954 acttagcttgtacttcaagcaa 41093975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 6463550 - 6463506
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgtta 401  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  6463550 gataatcacaatcagtggttaatcacattttgttttagtttgtta 6463506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 13271097 - 13271042
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgtta 413  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||    
T  13271097 gataatcacaatcagtgattaattacactttattttagtttgttat-aagtttgtta 13271042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 34590280 - 34590365
Alignment:
Q  389 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| |||     ||||| |||||||| || |||||||||| ||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatata---gagttagggtttgttatatagcttgtgctttaagcaa 34590365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 478
Target Start/End: Complemental strand, 6463514 - 6463443
Alignment:
Q  405 agtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    |||||||||||||||||||||||||||| | ||||| |   |||||||||||| |||  |||||||||||||||    
T  6463514 agtttgttacaagtttgttagaggttagtagataagat--ctagagtttgttacattatttgtgcttcaagcaa 6463443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 6463397 - 6463345
Alignment:
Q  520 tatgtagaatcaataaagatcatttacaattttcatcataac-tttcttctctc 572  Q
    |||||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  6463397 tatgtagaatcaataaagatcaattacaa-tttcatcataacttttcttctctc 6463345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 29767989 - 29768041
Alignment:
Q  372 tgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgtta 424  Q
    ||||| |||||| |||||||||||||||| | |||||||||||||||| ||||    
T  29767989 tgattgatcacactttgttttagtttgttttaaagtttgttacaagttggtta 29768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 478
Target Start/End: Complemental strand, 13271061 - 13270990
Alignment:
Q  405 agtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    ||||||||| |||||||||||||||||| ||||||| |   || ||||||||| |||| || ||||||||||||    
T  13271061 agtttgttataagtttgttagaggttagtaaataagat--ctaaagtttgttacattgtttttgcttcaagcaa 13270990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 7540 - 7757
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7540 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 7639  T
Q  457 aaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcatc 556  Q
    | |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7640 acattgcttgtgtttcaagcaacgtttagacttgtatataagaccattatcttgtacattcataatgtagaatcaataaagatcatttacaattttcatc 7739  T
Q  557 ataactttcttctctctc 574  Q
    ||||||||||||||||||    
T  7740 ataactttcttctctctc 7757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 357 - 519
Target Start/End: Original strand, 3014 - 3177
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3014 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 3113  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcat 519  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3114 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcat 3177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 44988 - 44771
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44988 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 44889  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  44888 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaa-attcat 44790  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  44789 cataactttcttctctctc 44771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 49568 - 49351
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49568 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 49469  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  49468 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaa-attcat 49370  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  49369 cataactttcttctctctc 49351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 16794142 - 16794360
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    |||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16794142 gataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 16794241  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  16794242 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcataatatagaatcaataaagatcatttacaattttcat 16794341  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  16794342 cataactttcttctctctc 16794360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 16798703 - 16798921
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    |||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16798703 gataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 16798802  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  16798803 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcataatatagaatcaataaagatcatttacaattttcat 16798902  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  16798903 cataactttcttctctctc 16798921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 12018765 - 12018984
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12018765 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 12018864  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatca-tttacaattttca 554  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||    
T  12018865 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcataaagtagaatcaataaagatcattttacaattttca 12018964  T
Q  555 tcataactttcttctctctc 574  Q
    |||||| |||||||||||||    
T  12018965 tcataattttcttctctctc 12018984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 12023323 - 12023542
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12023323 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 12023422  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatca-tttacaattttca 554  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||    
T  12023423 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcataaagtagaatcaataaagatcattttacaattttca 12023522  T
Q  555 tcataactttcttctctctc 574  Q
    |||||| |||||||||||||    
T  12023523 tcataattttcttctctctc 12023542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 7099497 - 7099280
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7099497 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 7099398  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||  |||||    
T  7099397 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcataatatagaatcaaaaaagatcatttacaa-attcat 7099299  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  7099298 cataactttcttctctctc 7099280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 7104066 - 7103849
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7104066 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 7103967  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||  |||||    
T  7103966 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcataatatagaatcaaaaaagatcatttacaa-attcat 7103868  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  7103867 cataactttcttctctctc 7103849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 37682070 - 37682277
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||    
T  37682070 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagt-----------ttgttagaggttagcaaataaggttgttagagtttgt 37682158  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37682159 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 37682258  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  37682259 cataactttcttctctctc 37682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 415 - 574
Target Start/End: Original strand, 37658814 - 37658973
Alignment:
Q  415 aagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtaca 514  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37658814 aagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtaca 37658913  T
Q  515 ttcattatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37658914 ttcattatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 37658973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 474
Target Start/End: Complemental strand, 32486109 - 32485994
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||    
T  32486109 gataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagat--ctagagtttgtt 32486012  T
Q  457 aaattgcttgtgcttcaa 474  Q
    | ||||||||||||||||    
T  32486011 acattgcttgtgcttcaa 32485994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 30695326 - 30695445
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   |||||||||||    
T  30695326 gataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtatataagat--ctagagtttgtt 30695423  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  30695424 acattgcttgtgcttcaagcaa 30695445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 19502341 - 19502461
Alignment:
Q  357 gataatcacaatcagtgattaa-tcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |   ||||||||||    
T  19502341 gataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagaaaataagat--atagagtttgt 19502438  T
Q  456 taaattgcttgtgcttcaagcaa 478  Q
    || |||| |||||||||||||||    
T  19502439 tacattgtttgtgcttcaagcaa 19502461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 26336930 - 26336810
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgtttt-agtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| |   ||||||||||    
T  26336930 gataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttgttagaggttagcaaataagat--ctagagtttgt 26336833  T
Q  456 taaattgcttgtgcttcaagcaa 478  Q
    || |||| |||||||||||||||    
T  26336832 tacattgtttgtgcttcaagcaa 26336810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 357 - 428
Target Start/End: Complemental strand, 40371859 - 40371788
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagagg 428  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  40371859 gataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgttagagg 40371788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 43384985 - 43385104
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||||| ||| |||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||| ||||||||||||  |   ||| |||||||    
T  43384985 gataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgtt 43385082  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | |||| |||||||||||||||    
T  43385083 acattgtttgtgcttcaagcaa 43385104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 375 - 478
Target Start/End: Complemental strand, 20830434 - 20830333
Alignment:
Q  375 ttaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaa 474  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||||||||| |||||||||||| |    || |||||||| ||||||||||||||||    
T  20830434 ttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagat--caagtgtttgttacattgcttgtgcttcaa 20830337  T
Q  475 gcaa 478  Q
    ||||    
T  20830336 gcaa 20830333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 36632383 - 36632454
Alignment:
Q  405 agtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    |||||||||||||||||||||||||||||||||||| |   |||||||||||| ||||||||||||||||||||    
T  36632383 agtttgttacaagtttgttagaggttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaa 36632454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 519
Target Start/End: Original strand, 5733069 - 5733154
Alignment:
Q  437 taaggttgttagagtttgttaaattgcttgtgcttcaagcaatgttta---gacttgtatataagaccattatcttgtacattcat 519  Q
    |||||||||||| ||||||||  |||||||||||||||||||  | ||   |||||||||||||||||||||||||||||||||||    
T  5733069 taaggttgttagggtttgttactttgcttgtgcttcaagcaacttatactagacttgtatataagaccattatcttgtacattcat 5733154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 20808746 - 20808681
Alignment:
Q  375 ttaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 440  Q
    ||||||||| || |||| |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  20808746 ttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataag 20808681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 10277237 - 10277323
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggtt 443  Q
    |||||||||||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| ||||||| |||||  ||||||||    
T  10277237 gataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggtt 10277323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 10274579 - 10274697
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||||||||| | || ||||||||| || | || ||||||||||||| ||||||||||||| ||||||| |||||  |||||   ||||| |||||||    
T  10274579 gataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataag---gttagggtttgtt 10274675  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    |  | |||||| ||||||||||    
T  10274676 atttagcttgtacttcaagcaa 10274697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 405 - 478
Target Start/End: Complemental strand, 40367688 - 40367617
Alignment:
Q  405 agtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    |||||||||||||||||||||||| ||| | ||||| |   |||||||||||| ||||||||||||||||||||    
T  40367688 agtttgttacaagtttgttagaggctagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaa 40367617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 37658767 - 37658823
Alignment:
Q  358 ataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgtta 413  Q
    ||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||    
T  37658767 ataatcataatcagtggttaatcacaagtttgttttagcttgttatgaagtttgtta 37658823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 40367724 - 40367680
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgtta 401  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||    
T  40367724 gataatcacaatcagagattaatcacattttgttttagtttgtta 40367680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 574
Target Start/End: Original strand, 30695491 - 30695545
Alignment:
Q  520 tatgtagaatcaataaagatcatttacaattttcatcataa-ctttcttctctctc 574  Q
    |||||||||||||||||||||| |||||| |||||||||||  |||||||||||||    
T  30695491 tatgtagaatcaataaagatcaattacaa-tttcatcataatttttcttctctctc 30695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 574
Target Start/End: Complemental strand, 40367570 - 40367517
Alignment:
Q  520 tatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 574  Q
    ||||||||||||||||  |||| ||||||||| |||||||| |||||||||||||    
T  40367570 tatgtagaatcaataagaatcaattacaattt-catcataattttcttctctctc 40367517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 7940206 - 7939989
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7940206 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 7940107  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||    
T  7940106 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcataatgtagaatcaataaagatcatttacaa-attcat 7940008  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  7940007 cataactttcttctctctc 7939989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 7944759 - 7944542
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7944759 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 7944660  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||    
T  7944659 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcataatgtagaatcaataaagatcatttacaa-attcat 7944561  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  7944560 cataactttcttctctctc 7944542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 27761430 - 27761649
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | | ||||| |   |||||||||||    
T  27761430 gataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggtttgtagataagat--ctagagtttgtt 27761527  T
Q  457 aaattgcttgtgcttcaagcaa--tgtttaga-cttgtatataagaccattatcttgtacattcat-tatgtagaatcaataaagatcatttacaatttt 552  Q
    | ||||||||||||||||||||  |   ||||  |||||||||||     |   |||||||||  | |||||||||||||||||||||||||||||||||    
T  27761528 acattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcatttacaatttt 27761627  T
Q  553 catcataactttcttctctctc 574  Q
    ||||||||||||||||||||||    
T  27761628 catcataactttcttctctctc 27761649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 27756879 - 27757098
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||| | | ||||| |   |||||||||||    
T  27756879 gataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgttagaggtttgtagataagat--ctagagtttgtt 27756976  T
Q  457 aaattgcttgtgcttcaagcaa--tgtttaga-cttgtatataagaccattatcttgtacattcat-tatgtagaatcaataaagatcatttacaatttt 552  Q
    | ||||||||||||||||||||  |   ||||  |||||||||||     |   |||||||||  | |||||||||||||||||||||||||||||||||    
T  27756977 acattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcatttacaatttt 27757076  T
Q  553 catcataactttcttctctctc 574  Q
    ||||||||||||||||||||||    
T  27757077 catcataactttcttctctctc 27757098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 22901188 - 22901407
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   ||||||||||    
T  22901188 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtttgt 22901285  T
Q  456 taaattgcttgtgcttcaagcaa--tgtttagac-ttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatca-tttacaattt 551  Q
    || ||||||||||||||||||||  |   ||||| |||||||||||     |   ||||| |||   |||||||||||||||||||||| |||||||  |    
T  22901286 tacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa-at 22901384  T
Q  552 tcatcataactttcttctctctc 574  Q
    |||||||||||||||||||||||    
T  22901385 tcatcataactttcttctctctc 22901407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 35705667 - 35705787
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttg-ttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |   ||||||||||    
T  35705667 gataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttgttagaggttagcaaataagat--ctagagtttgt 35705764  T
Q  456 taaattgcttgtgcttcaagcaa 478  Q
    || ||||||||||||||||||||    
T  35705765 tacattgcttgtgcttcaagcaa 35705787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 47419702 - 47419583
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||  |   |||||||||||    
T  47419702 gataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggttagcagataa--tatctagagtttgtt 47419605  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | |||| ||||| |||||||||    
T  47419604 acattgtttgtgtttcaagcaa 47419583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 391 - 478
Target Start/End: Complemental strand, 733756 - 733671
Alignment:
Q  391 ttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||| |   |||||||||||| |||||||||||||| |||||    
T  733756 ttagtttgttatgaaatttgttacaattttgttagaggttagcaaataagat--ctagagtttgttacattgcttgtgcttcgagcaa 733671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 478
Target Start/End: Complemental strand, 7466599 - 7466528
Alignment:
Q  405 agtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    |||||||||||||||||||||||||||||||||||| |   |||||||||||| |||| |||||||||||||||    
T  7466599 agtttgttacaagtttgttagaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaa 7466528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 474
Target Start/End: Original strand, 8675031 - 8675113
Alignment:
Q  391 ttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtta-aattgcttgtgcttcaa 474  Q
    |||||||||| ||||||||||||| || |||||||||  |||| |||||  |||||||||||||||| |||||||||||||||||    
T  8675031 ttagtttgttttgaagtttgttactaggttgttagagtgtagctaataa--ttgttagagtttgttacaattgcttgtgcttcaa 8675113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 375 - 476
Target Start/End: Complemental strand, 13828208 - 13828109
Alignment:
Q  375 ttaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaa 474  Q
    ||||||||| |||  ||| ||||||| ||||||||||||||||||||||||||  || | |||||  | ||||| || ||||| ||||||||||||||||    
T  13828208 ttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatctaataa--tagttagggtctgttacattgcttgtgcttcaa 13828111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 7466635 - 7466591
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgtta 401  Q
    |||||||||||||| |||||||||||| |||||||||||||||||    
T  7466635 gataatcacaatcaatgattaatcacattttgttttagtttgtta 7466591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 37355593 - 37355670
Alignment:
Q  357 gataatcacaatcagtgattaatcacaat-ttgttttagtttgttatgaagtttgttacaagtttgttagaggttagc 433  Q
    |||||||||| | |||| ||||||| | | ||| ||||||||||||||||  ||||||||||||| |||||| |||||    
T  37355593 gataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattagc 37355670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 1e-98; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 54172047 - 54171829
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54172047 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 54171948  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  54171947 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattcatgatatagaatcaataaagatcatttacaattttcat 54171848  T
Q  556 cataactttcttctctctc 574  Q
    || || |||||||||||||    
T  54171847 cacaattttcttctctctc 54171829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 54167467 - 54167249
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  54167467 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttaccaaataagggtgttagagtttgt 54167368  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  54167367 tacattgcttgtgcttcaagcaacgtttagacttgtatataacaccattatcttgtacattcatgatatagaatcaataaagatcatttacaattttcat 54167268  T
Q  556 cataactttcttctctctc 574  Q
    || || |||||||||||||    
T  54167267 cacaattttcttctctctc 54167249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 21847144 - 21847362
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||||||    
T  21847144 gataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtttgtt 21847241  T
Q  457 aaattgcttgtgcttcaagcaa--tgtttaga-cttgtatataagaccattatcttgtacattcat-tatgtagaatcaataaagatcatttacaatttt 552  Q
    | ||||||||||||||||||||  |   ||||  |||||||||||     |   |||||||||  | ||| ||||||||||||||||||||||||| |||    
T  21847242 acattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatatagaatcaataaagatcatttacaa-ttt 21847340  T
Q  553 catcataactttcttctctctc 574  Q
    ||||||||||||||||||||||    
T  21847341 catcataactttcttctctctc 21847362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 21850234 - 21850452
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||||||    
T  21850234 gataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtttgtt 21850331  T
Q  457 aaattgcttgtgcttcaagcaa--tgtttaga-cttgtatataagaccattatcttgtacattcat-tatgtagaatcaataaagatcatttacaatttt 552  Q
    | ||||||||||||||||||||  |   ||||  |||||||||||     |   |||||||||  | ||| ||||||||||||||||||||||||| |||    
T  21850332 acattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatatagaatcaataaagatcatttacaa-ttt 21850430  T
Q  553 catcataactttcttctctctc 574  Q
    ||||||||||||||||||||||    
T  21850431 catcataactttcttctctctc 21850452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 43547757 - 43547877
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgtttt-agtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |   ||||||||||    
T  43547757 gataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttaacaaataagat--ctagagtttgt 43547854  T
Q  456 taaattgcttgtgcttcaagcaa 478  Q
    || ||||||||||||||||||||    
T  43547855 tacattgcttgtgcttcaagcaa 43547877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 9105308 - 9105427
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| |   |||||||||||    
T  9105308 gataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgttagaggttaacaaataagat--ctagagtttgtt 9105405  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  9105406 acattgcttgtgcttcaagcaa 9105427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 11004527 - 11004408
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |   |||||||||||    
T  11004527 gataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgttagaggttagcaaataagat--ctagagtttgtt 11004430  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | |||| |||||||||||||||    
T  11004429 acattgtttgtgcttcaagcaa 11004408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 357 - 475
Target Start/End: Original strand, 9697620 - 9697737
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgtttt-agtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||    
T  9697620 gataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagat--ctagagtttgt 9697717  T
Q  456 taaattgcttgtgcttcaag 475  Q
     | |||||||||||||||||    
T  9697718 aacattgcttgtgcttcaag 9697737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 385 - 476
Target Start/End: Original strand, 755891 - 755981
Alignment:
Q  385 tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagc 476  Q
    |||||||||||||||| ||||||||||||||||||||||||||  || | |||||    ||||| |||||||| ||||||||||||||||||    
T  755891 tttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaactaataa-aaggttagggtttgttacattgcttgtgcttcaagc 755981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 39399246 - 39399128
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||||||||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| ||||||| |||||  |||||   ||||| |||||||    
T  39399246 gataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataag---gttagggtttgtt 39399150  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    |  | |||||| ||||||||||    
T  39399149 acttagcttgtacttcaagcaa 39399128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 478
Target Start/End: Original strand, 43554645 - 43554721
Alignment:
Q  400 tatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    |||||||||||||||||||||||||||||||| |||||||| |   |||||||| ||| ||||||| || |||||||||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagat--ctagagtttattacattgcttctgtttcaagcaa 43554721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 433
Target Start/End: Complemental strand, 38175896 - 38175833
Alignment:
Q  370 agtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagc 433  Q
    |||| ||||||||| || |||| ||||||||||||| ||||||||||||| ||||||| |||||    
T  38175896 agtggttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagc 38175833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Original strand, 755824 - 755857
Alignment:
Q  394 gtttgttatgaagtttgttacaagtttgttagag 427  Q
    ||||||| ||||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagag 755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 43554326 - 43554371
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttg-ttttagtttgtta 401  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||||    
T  43554326 gataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 3e-96; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 3770876 - 3771093
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3770876 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 3770975  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||||||||||    
T  3770976 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattca-aaagaagaatcaataaagatcatttacaattttcat 3771074  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  3771075 cataactttcttctctctc 3771093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 44147057 - 44147273
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44147057 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 44147156  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||    
T  44147157 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattca-taagtagaatcaataaagatcatttacaa-tttcat 44147254  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  44147255 cataactttcttctctctc 44147273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 44151592 - 44151808
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44151592 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 44151691  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||    
T  44151692 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattca-taagtagaatcaataaagatcatttacaa-tttcat 44151789  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  44151790 cataactttcttctctctc 44151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 357 - 574
Target Start/End: Original strand, 31670124 - 31670341
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||||||    
T  31670124 gataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtttgtt 31670221  T
Q  457 aaattgcttgtgcttcaagcaa--tgtttagac-ttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttc 553  Q
    | ||||||| ||||||||||||  |   ||||| |||||||||||     |   ||||| |||    |||||||||||||||||||||||||||| ||||    
T  31670222 acattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgaatgtagaatcaataaagatcatttacaa-tttc 31670320  T
Q  554 atcataactttcttctctctc 574  Q
    |||||||||||||||||||||    
T  31670321 atcataactttcttctctctc 31670341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 358 - 478
Target Start/End: Complemental strand, 10317186 - 10317068
Alignment:
Q  358 ataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtta 457  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||    
T  10317186 ataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagat--ctagagtttgtta 10317089  T
Q  458 aattgcttgtgcttcaagcaa 478  Q
     ||||||||||||||||||||    
T  10317088 cattgcttgtgcttcaagcaa 10317068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 8892744 - 8892625
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |   |||||||||||    
T  8892744 gataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttgttagagattagcaaataagat--atagagtttgtt 8892647  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | || |||||||||||||||||    
T  8892646 acatcgcttgtgcttcaagcaa 8892625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 53722040 - 53722159
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |   |||||||||||    
T  53722040 gataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggctagcagataagat--ctagagtttgtt 53722137  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  53722138 acattgcttgtgcttcaagcaa 53722159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 357 - 475
Target Start/End: Original strand, 27186176 - 27186295
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgtttt--agttt-gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagttt 453  Q
    |||||||||||| |||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||| |   ||||||||    
T  27186176 gataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtttgttagaggttagcaaataagat--ctagagttt 27186273  T
Q  454 gttaaattgcttgtgcttcaag 475  Q
    || | |||||||||||||||||    
T  27186274 gtaacattgcttgtgcttcaag 27186295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 43683787 - 43683731
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgtta 413  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43683787 gataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta 43683731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 478
Target Start/End: Complemental strand, 50628018 - 50627947
Alignment:
Q  405 agtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    |||||||||||||||||||||||||||||||||||| |   |||||||||||| ||||||||| ||||||||||    
T  50628018 agtttgttacaagtttgttagaggttagcaaataagat--ctagagtttgttacattgcttgtacttcaagcaa 50627947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 31359184 - 31359302
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||||||||| |||| ||||||||| || | || |||||| |||||| ||||||||||||| ||||||| |||||  |||||   ||||| |||||||    
T  31359184 gataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagttagagattagctcataag---gttagggtttgtt 31359280  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    |  | |||||| ||||||||||    
T  31359281 acttagcttgtacttcaagcaa 31359302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 45976277 - 45976222
Alignment:
Q  372 tgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagag 427  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||||    
T  45976277 tgattaatcacatcttgttttagtttgttttgaagtttgttacaagttttttagag 45976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 35842803 - 35842847
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgtta 401  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  35842803 gataatcacaatcagtgattaatcacactttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 41884958 - 41885033
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagc 433  Q
    |||||||||||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| ||||||| |||||    
T  41884958 gataatcacaattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagttagagattagc 41885033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 478
Target Start/End: Complemental strand, 43683740 - 43683679
Alignment:
Q  415 aagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    |||||||||||||||||||||||||| |   |||||||||||| |||| |||||||||||||||    
T  43683740 aagtttgttagaggttagcaaataagat--atagagtttgttacattgtttgtgcttcaagcaa 43683679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 478
Target Start/End: Original strand, 53785880 - 53785998
Alignment:
Q  358 ataatcacaatcagtgattaatcacaatt--tgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||| |||||| ||||||||| ||  |||||| |||||||| ||| ||||||||||||||||||||   ||||  |||   | ||||| ||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttata---tagttagggtttgt 53785975  T
Q  456 taaattgcttgtgcttcaagcaa 478  Q
    || || |||||||||||||||||    
T  53785976 tacatagcttgtgcttcaagcaa 53785998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 519
Target Start/End: Original strand, 31286093 - 31286129
Alignment:
Q  483 tagacttgtatataagaccattatcttgtacattcat 519  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31286093 tagacttgtatataagaccattatcttgtatattcat 31286129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 35842843 - 35842899
Alignment:
Q  420 tgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    ||||||||||||||||||||| |   |||||||||||| | ||||||||||||||||||    
T  35842843 tgttagaggttagcaaataagatc--tagagtttgttacaatgcttgtgcttcaagcaa 35842899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 478
Target Start/End: Complemental strand, 49274631 - 49274518
Alignment:
Q  361 atcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaat 460  Q
    |||| ||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| ||||||| |||||  |||||   ||||| ||||||||  |    
T  49274631 atcataattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagttagagattagctcataag---gttagggtttgttactt 49274536  T
Q  461 tgcttgtgcttcaagcaa 478  Q
     |||||| ||||||||||    
T  49274535 agcttgtacttcaagcaa 49274518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 6e-94; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 197807 - 197591
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  197807 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 197708  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||    
T  197707 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattca-taagaagaatcaataaagatcatttacaa-tttcat 197610  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  197609 cataactttcttctctctc 197591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 202325 - 202109
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  202325 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 202226  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||    
T  202225 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattca-taagaagaatcaataaagatcatttacaa-tttcat 202128  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  202127 cataactttcttctctctc 202109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 312644 - 312428
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312644 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 312545  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||    
T  312544 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattca-taagaagaatcaataaagatcatttacaa-tttcat 312447  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  312446 cataactttcttctctctc 312428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 317162 - 316946
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  317162 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 317063  T
Q  456 taaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatcatttacaattttcat 555  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||    
T  317062 tacattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattca-taagaagaatcaataaagatcatttacaa-tttcat 316965  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  316964 cataactttcttctctctc 316946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 43807607 - 43807391
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43807607 gataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 43807508  T
Q  457 aaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatc-aataaagatcatttacaattttcat 555  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||| ||||||    
T  43807507 acattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattca-tatgaagaatcaaaaaaagatcatttacaa-tttcat 43807410  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  43807409 cataactttcttctctctc 43807391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 43812166 - 43811950
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43812166 gataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 43812067  T
Q  457 aaattgcttgtgcttcaagcaatgtttagacttgtatataagaccattatcttgtacattcattatgtagaatc-aataaagatcatttacaattttcat 555  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||| ||||||    
T  43812066 acattgcttgtgcttcaagcaacgtttagacttgtatataagaccattatcttgtacattca-tatgaagaatcaaaaaaagatcatttacaa-tttcat 43811969  T
Q  556 cataactttcttctctctc 574  Q
    |||||||||||||||||||    
T  43811968 cataactttcttctctctc 43811950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 42234818 - 42234699
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||    
T  42234818 gataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagat--ctagagtttgtt 42234721  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  42234720 acattgcttgtgcttcaagcaa 42234699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 28644595 - 28644714
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||||||    
T  28644595 gataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtttgtt 28644692  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  28644693 acattgcttgtgcttcaagcaa 28644714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 33071951 - 33072070
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |   |||||||||||    
T  33071951 gataatcacaatcagtgattaatcacactttcttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgtt 33072048  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  33072049 acattgcttgtgcttcaagcaa 33072070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 30410453 - 30410235
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| | ||||| |   |||| ||||||    
T  30410453 gataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctagattttgtt 30410356  T
Q  457 aaattgcttgtgcttcaagcaa--tgtttaga-cttgtatataagaccattatcttgtacattcat-tatgtagaatcaataaagatcatttacaatttt 552  Q
    | ||||||||| ||||||||||  |   ||||  |||||||||||     |   |||||||||  | |||||||||||||||||||||| |||||| |||    
T  30410355 acattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcaattacaa-ttt 30410257  T
Q  553 catcataactttcttctctctc 574  Q
    ||||||||||||||||||||||    
T  30410256 catcataactttcttctctctc 30410235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 376 - 574
Target Start/End: Complemental strand, 30405925 - 30405726
Alignment:
Q  376 taatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaag 475  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   |||| ||||||| ||||||||| |||||||    
T  30405925 taatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctagaatttgttacattgcttgtacttcaag 30405828  T
Q  476 caa--tgtttaga-cttgtatataagaccattatcttgtacattcat-tatgtagaatcaataaagatcatttacaattttcatcataactttcttctct 571  Q
    |||  |   ||||  |||||||||||     |   |||||||||  | |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  30405827 caacctagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcaattacaa-tttcatcataactttcttctct 30405729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 357 - 424
Target Start/End: Original strand, 41949835 - 41949902
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgtta 424  Q
    ||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||    
T  41949835 gataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaagttggtta 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 420
Target Start/End: Original strand, 41945372 - 41945434
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagttt 420  Q
    |||||||||||||| |||||||||||| |||||||||||||||||  ||||| |||||||||||    
T  41945372 gataatcacaatcaatgattaatcacactttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 38757072 - 38757143
Alignment:
Q  405 agtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa 478  Q
    |||||||||||||||||||||||||||| | ||||| |   |||||||||||| |||||||||| |||||||||    
T  38757072 agtttgttacaagtttgttagaggttagtagataagat--ctagagtttgttacattgcttgtgattcaagcaa 38757143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 519
Target Start/End: Original strand, 1286730 - 1286815
Alignment:
Q  437 taaggttgttagagtttgttaaattgcttgtgcttcaagcaatgttta---gacttgtatataagaccattatcttgtacattcat 519  Q
    |||||||| ||| ||||||||  |||||||| ||||||||||  | ||   ||||||||||||||||||||  |||||||||||||    
T  1286730 taaggttgatagggtttgttactttgcttgtacttcaagcaacttatactagacttgtatataagaccattcacttgtacattcat 1286815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 574
Target Start/End: Original strand, 28644761 - 28644813
Alignment:
Q  521 atgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 574  Q
    |||||||||||||||  |||| ||||||||| |||||||| |||||||||||||    
T  28644761 atgtagaatcaataagaatcaattacaattt-catcataattttcttctctctc 28644813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 17096398 - 17096279
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   || ||||||||    
T  17096398 gataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctatagtttgtt 17096301  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  17096300 acattgcttgtgcttcaagcaa 17096279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 17895847 - 17895728
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |   |||| ||||||    
T  17895847 gataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagtttgttagaggttagcaaataagat--ctagaatttgtt 17895750  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  17895749 acattgcttgtgcttcaagcaa 17895728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 8315628 - 8315508
Alignment:
Q  357 gataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgt 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||||||||    
T  8315628 gataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctagagtttgt 8315531  T
Q  456 taaattgcttgtgcttcaagcaa 478  Q
    || ||||||||||||||||||||    
T  8315530 tacattgcttgtgcttcaagcaa 8315508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 357 - 475
Target Start/End: Complemental strand, 8320166 - 8320050
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   |||||||||||    
T  8320166 gataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctagagtttgtt 8320069  T
Q  457 aaattgcttgtgcttcaag 475  Q
    | |||||||||||||||||    
T  8320068 acattgcttgtgcttcaag 8320050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 17779948 - 17780067
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||| |  ||||||||||||    
T  17779948 gataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttgttagaggctagtagataagat--ttagagtttgtt 17780045  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  17780046 acattgcttgtgcttcaagcaa 17780067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 358 - 478
Target Start/End: Complemental strand, 14531910 - 14531792
Alignment:
Q  358 ataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtta 457  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |   ||||||||||||    
T  14531910 ataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttgttagaggttagcaaataagat--ctagagtttgtta 14531813  T
Q  458 aattgcttgtgcttcaagcaa 478  Q
     ||||||||||||| ||||||    
T  14531812 cattgcttgtgcttgaagcaa 14531792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 27552234 - 27552115
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| | ||||||| ||||| |   |||||||||||    
T  27552234 gataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaggtttgttaaacgttagcagataagat--ctagagtttgtt 27552137  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  27552136 acattgcttgtgcttcaagcaa 27552115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 357 - 477
Target Start/End: Complemental strand, 17886966 - 17886854
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||       |||||||||||||||||||||||||| |   |||||||||||    
T  17886966 gataatcacaatcagtgattaatcacattttgttttagtttgttataaagt------aaagtttgttagaggttagcaaataagat--ctagagtttgtt 17886875  T
Q  457 aaattgcttgtgcttcaagca 477  Q
    | |||||||||||||||||||    
T  17886874 acattgcttgtgcttcaagca 17886854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 27574851 - 27574795
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgtta 413  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  27574851 gataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgtta 27574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 362 - 478
Target Start/End: Complemental strand, 6440979 - 6440866
Alignment:
Q  362 tcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaatt 461  Q
    ||||||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| ||||||| |||||  |||||   ||||| ||||||||  |     
T  6440979 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataag---gttagggtttgttactta 6440883  T
Q  462 gcttgtgcttcaagcaa 478  Q
    |||||| ||||||||||    
T  6440882 gcttgtacttcaagcaa 6440866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 17163676 - 17163730
Alignment:
Q  372 tgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttaga 426  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  17163676 tgattgatcacactttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 7888268 - 7888212
Alignment:
Q  372 tgattaatcacaatttg-ttttagtttgttatgaagtttgttacaagtttgttagag 427  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||    
T  7888268 tgattaatcacactttgattttagtttgttttgaagtttgttacaactttgttagag 7888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Complemental strand, 8320014 - 8319960
Alignment:
Q  508 ttgtacattcattatgtagaatcaataaagatcatttacaattttcatcataactt 563  Q
    |||||||||  ||||||||||||||||||||||| || | ||||||||||||||||    
T  8320014 ttgtacatttcttatgtagaatcaataaagatcaatttc-attttcatcataactt 8319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 17159646 - 17159700
Alignment:
Q  372 tgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttaga 426  Q
    ||||| |||| | |||||||||||||||| ||| |||||||||||||| ||||||    
T  17159646 tgattgatcatactttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 39793864 - 39793983
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    ||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   |||||||||||    
T  39793864 gataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctagagtttgtt 39793961  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  39793962 acattgcttgtgcttcaagcaa 39793983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 43591945 - 43591826
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||  |||||||||||||||||||||  |   |||||||||||    
T  43591945 gataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgttagaggttagcaaataaaat--ctagagtttgtt 43591848  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | ||||||||||||||||||||    
T  43591847 acattgcttgtgcttcaagcaa 43591826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 16588602 - 16588483
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |   |||||||||||    
T  16588602 gataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttatcatataagat--ctagagtttgtt 16588505  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    | |||||||||| || ||||||    
T  16588504 acattgcttgtgttttaagcaa 16588483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 437 - 521
Target Start/End: Original strand, 41879932 - 41880019
Alignment:
Q  437 taaggttgttagagtttgttaaattgcttgtgcttcaagcaatgttta---gacttgtatataagaccattatcttgtacattcatta 521  Q
    |||||||||||| ||||||||  |||||||||||||||||||  | ||   |||||||||||||||||||||||||||||||||||||    
T  41879932 taaggttgttagggtttgttactttgcttgtgcttcaagcaacttatactagacttgtatataagaccattatcttgtacattcatta 41880019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 10504469 - 10504587
Alignment:
Q  357 gataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgtt 456  Q
    |||||||||||| |||||||||||||| || | || ||||||||||||| ||||||||||||| ||||||| |||||  |||||   ||||| |||||||    
T  10504469 gataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataag---gttagggtttgtt 10504565  T
Q  457 aaattgcttgtgcttcaagcaa 478  Q
    |  | |||||| ||||||||||    
T  10504566 acttagcttgtacttcaagcaa 10504587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 574
Target Start/End: Original strand, 26311591 - 26311760
Alignment:
Q  405 agtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa--tgtttaga-cttgtatataagacc 501  Q
    |||||||||||||||||||||||||||| | ||||| |   |||||||||||| ||||||||||||||||||||  |   ||||  |||||||||||       
T  26311591 agtttgttacaagtttgttagaggttagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagcta 26311688  T
Q  502 attatcttgtacattcattatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 574  Q
     ||   ||||| |||   |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  26311689 cttcctttgtatattttgtatgcagaatcaataaagatcaattacaa-tttcatcataactttcttctctctc 26311760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 574
Target Start/End: Original strand, 26316082 - 26316251
Alignment:
Q  405 agtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttaaattgcttgtgcttcaagcaa--tgtttaga-cttgtatataagacc 501  Q
    |||||||||||||||||||||||||||| | ||||| |   |||||||||||| ||||||||||||||||||||  |   ||||  |||||||||||       
T  26316082 agtttgttacaagtttgttagaggttagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagcta 26316179  T
Q  502 attatcttgtacattcattatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 574  Q
     ||   ||||| |||   |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  26316180 cttcctttgtatattttgtatgcagaatcaataaagatcaattacaa-tttcatcataactttcttctctctc 26316251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 521
Target Start/End: Complemental strand, 36164422 - 36164335
Alignment:
Q  437 taaggttgttagagtttgttaaattgcttgtgcttcaagcaatgttta---gacttgtatataagaccattatcttgtacattcatta 521  Q
    |||||||||||| ||||||||  |||||||||||| ||||||  | ||   ||||||||||| |||||||||||||||||||||||||    
T  36164422 taaggttgttagggtttgttactttgcttgtgctttaagcaacttatactagacttgtatattagaccattatcttgtacattcatta 36164335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Original strand, 39794016 - 39794070
Alignment:
Q  508 ttgtacattcattatgtagaatcaataaagatcatttacaattttcatcataactt 563  Q
    |||||||||   |||||||||||||||||||||| |||| ||||||||||||||||    
T  39794016 ttgtacatttcatatgtagaatcaataaagatcaattac-attttcatcataactt 39794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 60270 - 60201
Alignment:
Q  358 ataatcacaatcagtgattaatcacaatttgtttt-agtttgttatgaagtttgttacaagtttgttaga 426  Q
    ||||||||||| |||||||||||||| ||  |||| |||||||||| || |||||||| |||||||||||    
T  60270 ataatcacaattagtgattaatcacatttaatttttagtttgttataaattttgttaccagtttgttaga 60201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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