View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_high_50 (Length: 216)
Name: NF17474_high_50
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_high_50 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 28417390 - 28417182
Alignment:
| Q |
8 |
aaattcattatcatatgtaacaaactttccaattgcacttgtagagtctgagttagccatcatcgccaatatannnnnnnaacaatgccttcaatcttga |
107 |
Q |
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| T |
28417390 |
aaattcattatcatatgtaacaaactttccaattgcacttgtagagtctgagttagccatcatcgccaatatatttttttaacaatgccttcaatcttga |
28417291 |
T |
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| Q |
108 |
ttcttatatcacacgcagctcaaaatttcagattcctgtaacataatacaattatgtgattttgataagcaatatcatcatagatcaccctagattgagg |
207 |
Q |
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| T |
28417290 |
ttcttatatcacacgcagctcaaaatttcagattcctgtaacataatacaattatgtgattttgataagcaatatcatcatagatcaccctagatggagg |
28417191 |
T |
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| Q |
208 |
cattagcca |
216 |
Q |
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||||||||| |
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| T |
28417190 |
cattagcca |
28417182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 28403828 - 28403787
Alignment:
| Q |
35 |
tccaattgcacttgtagagtctgagttagccatcatcgccaa |
76 |
Q |
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| T |
28403828 |
tccaattgcactttttgagtctgagttagccatcatcaccaa |
28403787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 28585968 - 28586009
Alignment:
| Q |
35 |
tccaattgcacttgtagagtctgagttagccatcatcgccaa |
76 |
Q |
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||||||||||||| | ||||||||||||||||||||| |||| |
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| T |
28585968 |
tccaattgcactttttgagtctgagttagccatcatcaccaa |
28586009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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