View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17474_high_51 (Length: 215)

Name: NF17474_high_51
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17474_high_51
NF17474_high_51
[»] chr5 (2 HSPs)
chr5 (73-199)||(41221451-41221578)
chr5 (16-78)||(41216284-41216346)
[»] chr6 (1 HSPs)
chr6 (16-139)||(21757220-21757335)
[»] chr8 (1 HSPs)
chr8 (68-132)||(25760855-25760919)
[»] chr4 (1 HSPs)
chr4 (68-132)||(16706537-16706601)
[»] chr2 (1 HSPs)
chr2 (68-132)||(21601350-21601414)
[»] chr1 (1 HSPs)
chr1 (68-119)||(8797008-8797059)


Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 73 - 199
Target Start/End: Original strand, 41221451 - 41221578
Alignment:
Q  73 aaatatcaaatgacaatgttaaa-gatcaataatttctttatcaactttcgtcataagcttcttcacatcagacatttagcaacnnnnnnntcgatagca 171  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  41221451 aaatatcaaatgacaatgttaaaagatcaataatttctttatcaactttcgtcataagcttcttcacatcagacatttagcaacaaaaaaatcgatagca 41221550  T
Q  172 tatttaaattcaatataacactgaaagg 199  Q
    ||||||||||||||||||||||||||||    
T  41221551 tatttaaattcaatataacactgaaagg 41221578  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 41216284 - 41216346
Alignment:
Q  16 aaaatacaactcaaattccaatcaatcctatctatgatttacacttaacacgttaacaaatat 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  41216284 aaaatacaactcaaattccaatcaatcctatctatgatttacacttaatacgtaaacaaatat 41216346  T

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Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 21757335 - 21757220
Alignment:
Q  16 aaaatacaactcaaattccaatcaatcctatctatgatttacacttaacacgttaacaaatatcaaatgacaatgttaaagatcaataatttctttatca 115  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||        | |||||||||||||||||    
T  21757335 aaaatacaactcaaattccaattaatcctttctatgatttacacttaacacgttaacaaatatcaaacgacaa--------aacaataatttctttatca 21757244  T
Q  116 actttcgtcataagcttcttcaca 139  Q
    ||||||| ||||| |||| |||||    
T  21757243 actttcgacataaacttcatcaca 21757220  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 25760855 - 25760919
Alignment:
Q  68 ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactttcgtcataagctt 132  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||  | |||||||||    
T  25760855 ttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttcagacataagctt 25760919  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 16706537 - 16706601
Alignment:
Q  68 ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactttcgtcataagctt 132  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||  | |||||||||    
T  16706537 ttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttcagacataagctt 16706601  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 21601414 - 21601350
Alignment:
Q  68 ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactttcgtcataagctt 132  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||  | |||||||||    
T  21601414 ttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttcagacataagctt 21601350  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 8797059 - 8797008
Alignment:
Q  68 ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactt 119  Q
    |||||||||||||||| ||||  ||||||||||||  |||||||||||||||    
T  8797059 ttaacaaatatcaaataacaactttaaagatcaatcgtttctttatcaactt 8797008  T

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