View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17474_high_53 (Length: 214)

Name: NF17474_high_53
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17474_high_53
NF17474_high_53
[»] chr1 (18 HSPs)
chr1 (1-214)||(29059253-29059466)
chr1 (3-56)||(4859085-4859138)
chr1 (2-60)||(12852204-12852262)
chr1 (2-40)||(51067916-51067954)
chr1 (7-56)||(35527924-35527973)
chr1 (2-58)||(12213994-12214050)
chr1 (4-56)||(39949815-39949867)
chr1 (1-59)||(10356717-10356776)
chr1 (2-41)||(35690213-35690252)
chr1 (2-56)||(4770634-4770688)
chr1 (6-40)||(4799164-4799198)
chr1 (5-59)||(4897171-4897225)
chr1 (2-56)||(11410628-11410682)
chr1 (2-56)||(26256095-26256149)
chr1 (2-56)||(41677596-41677650)
chr1 (6-59)||(2884451-2884504)
chr1 (2-47)||(47835730-47835775)
chr1 (27-59)||(24170143-24170175)
[»] chr4 (11 HSPs)
chr4 (6-48)||(15023007-15023049)
chr4 (2-59)||(11949666-11949723)
chr4 (6-59)||(12588843-12588896)
chr4 (2-55)||(18635531-18635584)
chr4 (2-59)||(18903761-18903818)
chr4 (2-59)||(30135141-30135198)
chr4 (2-59)||(38939537-38939594)
chr4 (2-57)||(46779138-46779193)
chr4 (2-40)||(7371570-7371608)
chr4 (2-59)||(4911604-4911660)
chr4 (2-59)||(14202482-14202539)
[»] chr6 (6 HSPs)
chr6 (2-59)||(9311933-9311990)
chr6 (6-55)||(20713104-20713153)
chr6 (11-59)||(8138461-8138509)
chr6 (1-53)||(10787642-10787693)
chr6 (4-56)||(2445302-2445354)
chr6 (2-58)||(24248166-24248222)
[»] chr3 (21 HSPs)
chr3 (2-59)||(40644631-40644688)
chr3 (2-58)||(3612186-3612242)
chr3 (2-50)||(11574254-11574302)
chr3 (1-41)||(39100437-39100477)
chr3 (2-41)||(38573594-38573633)
chr3 (2-40)||(10843803-10843841)
chr3 (2-56)||(17588363-17588417)
chr3 (2-56)||(22486684-22486738)
chr3 (2-56)||(23882831-23882885)
chr3 (2-40)||(47099057-47099095)
chr3 (2-56)||(53633623-53633677)
chr3 (6-59)||(2186430-2186483)
chr3 (6-59)||(21160057-21160110)
chr3 (2-59)||(35126272-35126329)
chr3 (7-56)||(41151468-41151517)
chr3 (2-59)||(52340525-52340582)
chr3 (2-59)||(54243386-54243443)
chr3 (7-59)||(1111844-1111896)
chr3 (3-59)||(17755123-17755179)
chr3 (3-59)||(19056443-19056499)
chr3 (2-42)||(48673867-48673907)
[»] chr2 (12 HSPs)
chr2 (7-47)||(11764390-11764430)
chr2 (2-56)||(27934863-27934917)
chr2 (3-41)||(11846399-11846437)
chr2 (1-35)||(31935831-31935865)
chr2 (2-47)||(8775271-8775316)
chr2 (2-59)||(10195665-10195722)
chr2 (2-55)||(16204824-16204877)
chr2 (6-59)||(17842715-17842768)
chr2 (2-59)||(41165436-41165493)
chr2 (2-38)||(9718395-9718431)
chr2 (1-45)||(10991542-10991586)
chr2 (4-56)||(12619347-12619399)
[»] chr8 (6 HSPs)
chr8 (12-59)||(9727349-9727396)
chr8 (2-56)||(19701350-19701404)
chr8 (11-59)||(3757960-3758008)
chr8 (2-55)||(17913934-17913987)
chr8 (2-59)||(28439960-28440017)
chr8 (3-59)||(29546895-29546951)
[»] chr5 (9 HSPs)
chr5 (2-61)||(36623175-36623234)
chr5 (3-47)||(10045334-10045378)
chr5 (11-59)||(16094067-16094115)
chr5 (6-41)||(42178826-42178861)
chr5 (2-56)||(23118057-23118111)
chr5 (11-56)||(2705522-2705567)
chr5 (6-59)||(5614770-5614823)
chr5 (2-59)||(13864345-13864402)
chr5 (2-59)||(36170056-36170113)
[»] chr7 (11 HSPs)
chr7 (2-59)||(24614696-24614753)
chr7 (2-59)||(34000263-34000320)
chr7 (1-45)||(15015241-15015285)
chr7 (2-40)||(429200-429238)
chr7 (6-56)||(31723410-31723460)
chr7 (3-41)||(46856083-46856121)
chr7 (2-59)||(5458074-5458131)
chr7 (2-59)||(5526726-5526783)
chr7 (2-59)||(25251511-25251568)
chr7 (2-59)||(37230031-37230088)
chr7 (2-59)||(43539107-43539164)
[»] scaffold0070 (1 HSPs)
scaffold0070 (4-40)||(42954-42990)
[»] scaffold1064 (1 HSPs)
scaffold1064 (2-59)||(652-709)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 29059466 - 29059253
Alignment:
Q  1 atgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaaaatagaaaatagagggtgctcctaaaacaaaggttagaaat 100  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||    
T  29059466 atgagcttaattcagttggtaagaataatgcataatatatataagatctaggattcaaatatagaaaatagagggtgctcctaaaacaaaggttagaaat 29059367  T
Q  101 tatagcatgattaggtaaataaagattattgaactttgaagtggctatattaaatattagtactagcatgaaaggtatatggaacatgatatatgtcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059366 tatagcatgattaggtaaataaagattattgaactttgaagtggctatattaaatattagtactagcatgaaaggtatatggaacatgatatatgtcatt 29059267  T
Q  201 ttacccaaaggctt 214  Q
    ||||||||||||||    
T  29059266 ttacccaaaggctt 29059253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 4859085 - 4859138
Alignment:
Q  3 gagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  4859085 gagcttaactcagttgataagaataatacataatatatgtaaggtctggggttc 4859138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 12852262 - 12852204
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaaa 60  Q
    |||| |||||||||||| || | ||||| |||||||||| |||||||||||||||||||    
T  12852262 tgaggttaactcagttggtagggataatgcataatatatgtaagatctggggttcaaaa 12852204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 51067954 - 51067916
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatat 40  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  51067954 tgagcttaactcagttggtaagaataatacataatatat 51067916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 35527924 - 35527973
Alignment:
Q  7 ttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||||||||||||||| |||||| ||||||||||||||| | ||||||||    
T  35527924 ttaactcagttgataaaaataatgcataatatatataaggtttggggttc 35527973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 12213994 - 12214050
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaa 58  Q
    |||||||| ||||||||||| ||| ||||||||||||||  ||| ||||||||||||    
T  12213994 tgagcttagctcagttgataggaacaatacataatatatgcaaggtctggggttcaa 12214050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 39949815 - 39949867
Alignment:
Q  4 agcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    ||||||||||||||| |||||| ||| ||||||||||| ||| ||||||||||    
T  39949815 agcttaactcagttggtaagaacaatgcataatatatacaaggtctggggttc 39949867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10356776 - 10356717
Alignment:
Q  1 atgagcttaactcagttgata-agaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||||||||||| |||| ||| ||||||||||  ||| |||||||||||||    
T  10356776 atgagcttaactcagttgatagagaaaaatgcataatatatgcaaggtctggggttcaaa 10356717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 35690213 - 35690252
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatata 41  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  35690213 tgagcttaactcagttggtaggaataatacataatatata 35690252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 4770688 - 4770634
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||||||||||||||||||| ||| ||| ||| ||||||||||| |||| |||||    
T  4770688 tgagcttaactcagttgatatgaacaatgcatgatatatataaggtctgaggttc 4770634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 4799198 - 4799164
Alignment:
Q  6 cttaactcagttgataagaataatacataatatat 40  Q
    |||||||||||||||||||||||| ||||||||||    
T  4799198 cttaactcagttgataagaataatccataatatat 4799164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 4897225 - 4897171
Alignment:
Q  5 gcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||||||||| ||   | || ||||||||||||||||||||||||||||||    
T  4897225 gcttaactcagttgctatagacaagacataatatatataagatctggggttcaaa 4897171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 11410628 - 11410682
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    ||||||||||||||||| || ||| ||||||||| |||| |||| ||||||||||    
T  11410628 tgagcttaactcagttggtatgaacaatacataaaatatgtaaggtctggggttc 11410682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 26256149 - 26256095
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    ||||||||||||||||||||||  |||| ||||||||||  |||||| |||||||    
T  26256149 tgagcttaactcagttgataagggtaatgcataatatatgcaagatccggggttc 26256095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 41677650 - 41677596
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||||||| |||||||| |||| | |||||||||||||| ||||||| |||||||    
T  41677650 tgagcttagctcagttggtaaggacaatacataatatatgtaagatccggggttc 41677596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 2884504 - 2884451
Alignment:
Q  6 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||||||||||| | | ||| ||||||||||| |||||| ||||||||||    
T  2884504 cttaactcagttgatatggacaatgcataatatatacaagatcgggggttcaaa 2884451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 47835775 - 47835730
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagat 47  Q
    |||| |||||||||||||||| || ||||||||||||||| |||||    
T  47835775 tgagtttaactcagttgataaaaacaatacataatatatacaagat 47835730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 24170175 - 24170143
Alignment:
Q  27 aatacataatatatataagatctggggttcaaa 59  Q
    |||||||||||||| ||||||||||||||||||    
T  24170175 aatacataatatatgtaagatctggggttcaaa 24170143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 15023049 - 15023007
Alignment:
Q  6 cttaactcagttgataagaataatacataatatatataagatc 48  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  15023049 cttaactcagttgctaagaataatacataatatatataagatc 15023007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 11949723 - 11949666
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||| ||||||||||||||| ||||||||||||||| || ||  ||||||||||    
T  11949723 tgagcttagctcagttgataagaacaatacataatatatacaaaattcggggttcaaa 11949666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 12588896 - 12588843
Alignment:
Q  6 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||| || ||| ||||||||| |||||||||||||| ||||||||    
T  12588896 cttaactcagttggtatgaacaatacataaaatatataagatctgaggttcaaa 12588843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 18635531 - 18635584
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggtt 55  Q
    |||||||||||||||||||||| | ||| ||||||||||| ||| |||||||||    
T  18635531 tgagcttaactcagttgataaggacaatgcataatatatacaaggtctggggtt 18635584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 18903818 - 18903761
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||| ||| |||||||||||| |||||| |||||||||| |||| |||||||||||||    
T  18903818 tgagtttagctcagttgataaaaataatgcataatatatgtaaggtctggggttcaaa 18903761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 30135141 - 30135198
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||||||||||||||||| ||||| |||||||||| | ||||| | ||||||||    
T  30135141 tgagcttaactcagttgataaggataatgcataatatatgtcagatccgaggttcaaa 30135198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 38939594 - 38939537
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||| | ||||| ||||||| ||||| ||||||||||||||| |||||||||||||    
T  38939594 tgagctaagctcagctgataaggataatgcataatatatataaggtctggggttcaaa 38939537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 46779138 - 46779193
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttca 57  Q
    ||||||||||||| |||||| ||||||| | |||||||| |||||| |||||||||    
T  46779138 tgagcttaactcaattgataggaataatgcgtaatatatgtaagatttggggttca 46779193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 7371608 - 7371570
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatat 40  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  7371608 tgagcttaactcagttgataaggacaatacataatatat 7371570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 4911660 - 4911604
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||||||||||||||||| || || |||||||||| |||| |||| ||||||||    
T  4911660 tgagcttaactcagttgataaggat-atgcataatatatgtaaggtctgaggttcaaa 4911604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 14202539 - 14202482
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||||||||||||||  | ||||| |||||||||| |||| || ||||||||||    
T  14202539 tgagcttaactcagttgatttggataatgcataatatatgtaaggtccggggttcaaa 14202482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 9311990 - 9311933
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||||||| || |||||||||||||||||| |||||| || ||||||||    
T  9311990 tgagcttaactcagttggtatgaataatacataatatatgtaagatttgaggttcaaa 9311933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 20713104 - 20713153
Alignment:
Q  6 cttaactcagttgataagaataatacataatatatataagatctggggtt 55  Q
    ||||||||| |||||||| |||||| |||||||||||||||| |||||||    
T  20713104 cttaactcaattgataaggataatatataatatatataagatatggggtt 20713153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 8138509 - 8138461
Alignment:
Q  11 ctcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||||| ||| |||||||||| |||| |||||||||||||    
T  8138509 ctcagttgataagaacaatgcataatatatgtaaggtctggggttcaaa 8138461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10787693 - 10787642
Alignment:
Q  1 atgagcttaactcagttgataagaataatacataatatatataagatctgggg 53  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||| |||||||    
T  10787693 atgaggttaactcagttgataa-aataatgcataatatatataaggtctgggg 10787642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 2445302 - 2445354
Alignment:
Q  4 agcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||||||||||||||||| ||| ||| ||||||||||| |||||  |||||||    
T  2445302 agcttaactcagttgatatgaacaatgcataatatatacaagattcggggttc 2445354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 24248166 - 24248222
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaa 58  Q
    |||||||| | |||||| |||| |||||||||||||||| |||| || |||||||||    
T  24248166 tgagcttagcacagttggtaaggataatacataatatatgtaaggtccggggttcaa 24248222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 40644631 - 40644688
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||| |||||||||||  |||||| || ||||||||||||||||||||||||||||||    
T  40644631 tgagtttaactcagtttgtaagaacaacacataatatatataagatctggggttcaaa 40644688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 3612242 - 3612186
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaa 58  Q
    |||||||| ||||||||||| | ||||| ||||||||||||||| || |||||||||    
T  3612242 tgagcttagctcagttgatatggataatgcataatatatataagctccggggttcaa 3612186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 11574254 - 11574302
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctg 50  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||| ||||    
T  11574254 tgagcttaactcagttgataaggataatgcataatatatacaaggtctg 11574302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39100477 - 39100437
Alignment:
Q  1 atgagcttaactcagttgataagaataatacataatatata 41  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  39100477 atgagcttaactcagttgataagaacaatgcataatatata 39100437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 38573633 - 38573594
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatata 41  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  38573633 tgagcttaactcagttgataagaacaatgcataatatata 38573594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 10843841 - 10843803
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatat 40  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  10843841 tgagcttaactcagttggtatgaataatacataatatat 10843803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 17588363 - 17588417
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    ||||||||||||||||| |||| | ||| ||||||||||  ||||||||||||||    
T  17588363 tgagcttaactcagttggtaaggacaatgcataatatatgcaagatctggggttc 17588417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 22486684 - 22486738
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    ||||||||||||||||| |||||| ||| ||||||||||  ||||| ||||||||    
T  22486684 tgagcttaactcagttggtaagaacaatgcataatatatgcaagatttggggttc 22486738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 23882831 - 23882885
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||||||| ||||||||||||| | ||| |||||||| |||||| ||||||||||    
T  23882831 tgagcttagctcagttgataaggacaattcataatatttataaggtctggggttc 23882885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 47099095 - 47099057
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatat 40  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  47099095 tgagcttagctcagttgataagaataatgcataatatat 47099057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 53633677 - 53633623
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    ||||||||||||||||| |||| ||||| |||||||||| |||| || |||||||    
T  53633677 tgagcttaactcagttggtaaggataatgcataatatatgtaaggtccggggttc 53633623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 2186483 - 2186430
Alignment:
Q  6 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||| || | | |||||||||||||| |||| |||||||||||||    
T  2186483 cttaactcagttggtatggacaatacataatatatgtaaggtctggggttcaaa 2186430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 21160057 - 21160110
Alignment:
Q  6 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||||||||||| | ||||| |||||||||| |||| || ||||||||||    
T  21160057 cttaactcagttgatatggataatgcataatatatgtaaggtcgggggttcaaa 21160110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 35126329 - 35126272
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||| |||||||||||| || | ||||| ||||||||||  |||||||||||||||||    
T  35126329 tgagtttaactcagttggtagggataatgcataatatatgcaagatctggggttcaaa 35126272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 41151468 - 41151517
Alignment:
Q  7 ttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||||||||||| ||| ||||||||||||||||| | | |||||||||||    
T  41151468 ttaactcagttggtaaaaataatacataatatatgttaaatctggggttc 41151517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 52340525 - 52340582
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||||||||  || |||||| ||| |||||||||| |||||| |||||||||||    
T  52340525 tgagcttaactcaactgttaagaaaaattcataatatatgtaagatttggggttcaaa 52340582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 54243386 - 54243443
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||||||| |||| |  || |||||||||| ||||||| ||||||||||    
T  54243386 tgagcttaactcagttggtaagcacgatgcataatatatttaagatccggggttcaaa 54243443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 1111896 - 1111844
Alignment:
Q  7 ttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||||| | | ||||||||||||||  ||| |||||||||||||    
T  1111896 ttaactcagttgatagggacaatacataatatatgcaaggtctggggttcaaa 1111844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 17755123 - 17755179
Alignment:
Q  3 gagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||| ||||||||||| ||| |||||||||||||| |||| |  ||||||||||    
T  17755123 gagcttagctcagttgataggaacaatacataatatatgtaaggttcggggttcaaa 17755179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 19056443 - 19056499
Alignment:
Q  3 gagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||| ||||||||||| ||| |||||||||||||| |||| |  ||||||||||    
T  19056443 gagcttagctcagttgataggaacaatacataatatatgtaaggttcggggttcaaa 19056499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 48673907 - 48673867
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatat 42  Q
    |||| |||||||||||| |||| ||||||||||||||||||    
T  48673907 tgagtttaactcagttggtaaggataatacataatatatat 48673867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 11764390 - 11764430
Alignment:
Q  7 ttaactcagttgataagaataatacataatatatataagat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  11764390 ttaactcagttgataagaataatgcataatatatataagat 11764430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 27934917 - 27934863
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||||||| |||||||| |||| | ||||||||||||||| ||||||||||||||    
T  27934917 tgagcttagctcagttggtaaggacaatacataatatatacaagatctggggttc 27934863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 11846399 - 11846437
Alignment:
Q  3 gagcttaactcagttgataagaataatacataatatata 41  Q
    |||||||||||||||| || |||||||||||||||||||    
T  11846399 gagcttaactcagttggtaggaataatacataatatata 11846437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31935865 - 31935831
Alignment:
Q  1 atgagcttaactcagttgataagaataatacataa 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  31935865 atgaacttaactcagttgataagaataatacataa 31935831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 8775271 - 8775316
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagat 47  Q
    ||||||||  |||||||||| |||||||||||||||||| ||||||    
T  8775271 tgagcttaggtcagttgataggaataatacataatatatgtaagat 8775316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 10195722 - 10195665
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||| ||||||||||| | ||||| ||||||||||  ||||||||| |||||||    
T  10195722 tgagcttagctcagttgatatggataatgcataatatatgcaagatctggagttcaaa 10195665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 16204877 - 16204824
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggtt 55  Q
    |||||||||||||||||||||| | ||| ||||||||||  ||| |||||||||    
T  16204877 tgagcttaactcagttgataaggacaatgcataatatatgcaaggtctggggtt 16204824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 17842768 - 17842715
Alignment:
Q  6 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||| |||||||||||| ||| |||||||||| ||||||| || |||||||    
T  17842768 cttaacttagttgataagaacaatgcataatatatgtaagatccggagttcaaa 17842715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 41165436 - 41165493
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||||||| || | ||||| ||||||||||||||| | || ||||||||    
T  41165436 tgagcttaactcagttgttatggataatgcataatatatataaggtatgaggttcaaa 41165493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 9718395 - 9718431
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatat 38  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  9718395 tgagcttaactcagttgataagaacaatgcataatat 9718431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10991542 - 10991586
Alignment:
Q  1 atgagcttaactcagttgataagaataatacataatatatataag 45  Q
    |||||||||||||||||| |||| | |||||||||||||| ||||    
T  10991542 atgagcttaactcagttggtaaggacaatacataatatatgtaag 10991586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 12619347 - 12619399
Alignment:
Q  4 agcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||||| ||||||||||||  ||||| ||||||||||  ||||||||||||||    
T  12619347 agcttagctcagttgataatgataatgcataatatatgcaagatctggggttc 12619399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 9727396 - 9727349
Alignment:
Q  12 tcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  9727396 tcagttaataagaataatgcataatatatataagatcaggggttcaaa 9727349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 19701404 - 19701350
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||| ||||||||||||||||| ||||| |||||||||| |||| ||||||||||    
T  19701404 tgagtttaactcagttgataaggataatgcataatatatgtaaggtctggggttc 19701350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 3758008 - 3757960
Alignment:
Q  11 ctcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||| ||| ||| |||||||||| ||||||||||||||||||    
T  3758008 ctcagttgataggaacaatgcataatatatgtaagatctggggttcaaa 3757960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 17913934 - 17913987
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggtt 55  Q
    |||||||| ||||||||||||| |||||||||||| | | |||| |||||||||    
T  17913934 tgagcttagctcagttgataaggataatacataatgtttgtaaggtctggggtt 17913987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 28439960 - 28440017
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||| |||| |||||||||||  ||||| |||||||||| |||| |||||||||||||    
T  28439960 tgagtttaattcagttgataaagataatgcataatatatgtaaggtctggggttcaaa 28440017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 29546895 - 29546951
Alignment:
Q  3 gagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||||||||| | | |||| |||||||||  ||| |||||||||||||    
T  29546895 gagcttaactcagttgatagggacaatagataatatatgcaaggtctggggttcaaa 29546951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 36623234 - 36623175
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaaaa 61  Q
    |||||||||||||||||||||||||||| ||||||||||  ||| ||| | |||||||||    
T  36623234 tgagcttaactcagttgataagaataatgcataatatatgcaaggtctagagttcaaaaa 36623175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 10045334 - 10045378
Alignment:
Q  3 gagcttaactcagttgataagaataatacataatatatataagat 47  Q
    |||||||||||||||| |||  |||||||||||||||||||||||    
T  10045334 gagcttaactcagttggtaaagataatacataatatatataagat 10045378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 16094067 - 16094115
Alignment:
Q  11 ctcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||| | ||||| |||||||||| ||||||||||||||||||    
T  16094067 ctcagttgatagggataatgcataatatatgtaagatctggggttcaaa 16094115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 42178861 - 42178826
Alignment:
Q  6 cttaactcagttgataagaataatacataatatata 41  Q
    ||||||||| ||||||||||||||||||||||||||    
T  42178861 cttaactcaattgataagaataatacataatatata 42178826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 23118111 - 23118057
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||||||||||||||||||||| | ||| |||||||||| |||| | ||||||||    
T  23118111 tgagcttaactcagttgataaggacaatgcataatatatgtaaggtttggggttc 23118057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 2705567 - 2705522
Alignment:
Q  11 ctcagttgataagaataatacataatatatataagatctggggttc 56  Q
    ||||||||||||||| |||||||||||||| |||| |||| |||||    
T  2705567 ctcagttgataagaacaatacataatatatgtaaggtctgaggttc 2705522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 5614770 - 5614823
Alignment:
Q  6 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||||||||||| | ||||| |||||||||| |||| || ||||||||||    
T  5614770 cttaactcagttgatatggataatgcataatatatgtaaggtcgggggttcaaa 5614823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 13864345 - 13864402
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||||||| || ||| ||||||||||||||  ||| || ||||||||||    
T  13864345 tgagcttaactcagttggtatgaacaatacataatatatgcaaggtccggggttcaaa 13864402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 36170056 - 36170113
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||| ||| || ||||||| |||||||||| |||||| || ||||||||    
T  36170056 tgagcttaactcaattgctaggaataatgcataatatatgtaagatatgaggttcaaa 36170113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 24614696 - 24614753
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||  ||||| |||||||    
T  24614696 tgagtttaactcagttgataggaataatgcataatatatataatgtctggagttcaaa 24614753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 34000263 - 34000320
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||||||||||||||||| ||||| |||||||||| |||| |  ||||||||||    
T  34000263 tgagcttaactcagttgataaggataatgcataatatatgtaaggttcggggttcaaa 34000320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15015241 - 15015285
Alignment:
Q  1 atgagcttaactcagttgataagaataatacataatatatataag 45  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||||    
T  15015241 atgagcttaactcagttgataagaacaatgcataatatatgtaag 15015285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 429238 - 429200
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatat 40  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  429238 tgagcttaactcagttgatatggataatacataatatat 429200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 31723460 - 31723410
Alignment:
Q  6 cttaactcagttgataagaataatacataatatatataagatctggggttc 56  Q
    |||||||||||||||||||| |||| |||||||||  |||||||| |||||    
T  31723460 cttaactcagttgataagaacaatatataatatatgcaagatctgaggttc 31723410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 46856083 - 46856121
Alignment:
Q  3 gagcttaactcagttgataagaataatacataatatata 41  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  46856083 gagcctaactcagttgataggaataatacataatatata 46856121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 5458131 - 5458074
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||| ||||||||||||||| ||| ||||||||||  ||| |||||| ||||||    
T  5458131 tgagcttagctcagttgataagaacaatgcataatatatgcaaggtctgggattcaaa 5458074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 5526726 - 5526783
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||| |||||||| || | | ||| ||||||||||||||||| |||||||||||    
T  5526726 tgagcttagctcagttggtatggacaatgcataatatatataagatttggggttcaaa 5526783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 25251511 - 25251568
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||||||| ||  || ||| ||||||||||||||| | |||||||||||    
T  25251511 tgagcttaactcagttggtataaacaatgcataatatatataaggtttggggttcaaa 25251568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 37230088 - 37230031
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||||||| |||| | ||| ||||||||||  ||| |||||||||||||    
T  37230088 tgagcttaactcagttggtaaggaaaatgcataatatatgcaaggtctggggttcaaa 37230031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 43539164 - 43539107
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    |||||||| ||||||||||| ||| ||| |||||||||| |||| || ||||||||||    
T  43539164 tgagcttagctcagttgataggaacaatgcataatatatgtaaggtccggggttcaaa 43539107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 42990 - 42954
Alignment:
Q  4 agcttaactcagttgataagaataatacataatatat 40  Q
    |||||||||||||||||||||||||| ||||||||||    
T  42990 agcttaactcagttgataagaataatgcataatatat 42954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1064 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 652 - 709
Alignment:
Q  2 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 59  Q
    ||||||||||||| ||| ||||||||| |||||| ||||| ||||| || ||||||||    
T  652 tgagcttaactcatttggtaagaataagacataaaatatacaagatttgaggttcaaa 709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University