View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_high_56 (Length: 207)
Name: NF17474_high_56
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 38625996 - 38625820
Alignment:
| Q |
19 |
acttctattgtttttactttgattcaaatactgggattctatttgttttcaatgatcaaaatgaaatgtttttgaatcgtaagaacatgcttcattatat |
118 |
Q |
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| T |
38625996 |
acttctattgtttttactttgattcaaatactgggattctatttgttttcaatgatcaaaatgaaatgtttttgaatcgtaagaacatgcttcattatat |
38625897 |
T |
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| Q |
119 |
tttcagctaatactaccacttctgtaaagaaaatttcttacttgtatgtcctagcattagacggttcctttgctact |
195 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38625896 |
tttcagctaatactgccacttctgtaaagaaaatttcttacttgtatgtcctagcattagacggttcctttgctact |
38625820 |
T |
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