View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_high_57 (Length: 205)
Name: NF17474_high_57
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_high_57 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 13146341 - 13146165
Alignment:
| Q |
12 |
actaattacaatgttacaacttgagctgattaaagagatgcatacaatattttcacaagcaggtgctcaaataggtgtttgttatggcatggaaggaacc |
111 |
Q |
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| T |
13146341 |
actaattacaatgttacaacttgagctgattaaagagatgcatacaatattttcacaagcaggtgctcaaataggtgtttgttatggcatggaaggaacc |
13146242 |
T |
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| Q |
112 |
aatctaccatcacaacgtgaagcaatagatctttgcaaatcaaacaacatcaaaagaatgaggctatatgatccaaa |
188 |
Q |
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| T |
13146241 |
aatctaccatcacaacgtgaagcaatagatctttgcaaatcaaacaacatcaaaagaatgaggctatatgatccaaa |
13146165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 13153056 - 13152929
Alignment:
| Q |
61 |
ttttcacaagcaggtgctcaaataggtgtttgttatggcatggaaggaaccaatctaccatcacaacgtgaagcaatagatctttgcaaatcaaacaaca |
160 |
Q |
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| T |
13153056 |
ttttcacaagcaggtgctcaaataggtgtttgttatggcatgatgggaaataatctaccatcacaacgtgaagcaatagatctttgcaaatcaaacaaca |
13152957 |
T |
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| Q |
161 |
tcaaaagaatgaggctatatgatccaaa |
188 |
Q |
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| T |
13152956 |
tcaaaagaatgaggctatatgatccaaa |
13152929 |
T |
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