View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17474_high_6 (Length: 526)

Name: NF17474_high_6
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17474_high_6
NF17474_high_6
[»] chr2 (6 HSPs)
chr2 (5-512)||(26979400-26979907)
chr2 (5-496)||(27021100-27021595)
chr2 (262-510)||(27086787-27087035)
chr2 (9-215)||(27087050-27087276)
chr2 (294-443)||(39747819-39747969)
chr2 (143-192)||(39350464-39350513)
[»] chr6 (1 HSPs)
chr6 (5-512)||(34681795-34682305)
[»] chr8 (4 HSPs)
chr8 (322-488)||(11633167-11633333)
chr8 (5-199)||(11632930-11633130)
chr8 (147-192)||(26274019-26274064)
chr8 (147-192)||(42196136-42196181)
[»] chr5 (3 HSPs)
chr5 (117-192)||(10373584-10373659)
chr5 (147-191)||(19256962-19257006)
chr5 (150-190)||(35257333-35257373)
[»] chr3 (1 HSPs)
chr3 (115-189)||(1550415-1550489)
[»] chr1 (4 HSPs)
chr1 (119-192)||(12387878-12387951)
chr1 (129-186)||(15252194-15252251)
chr1 (147-192)||(42947852-42947897)
chr1 (146-199)||(45394551-45394604)
[»] chr7 (3 HSPs)
chr7 (146-184)||(36089754-36089792)
chr7 (125-188)||(22787801-22787864)
chr7 (147-189)||(40078663-40078705)
[»] chr4 (2 HSPs)
chr4 (151-192)||(34148816-34148857)
chr4 (116-144)||(32021348-32021376)


Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 5 - 512
Target Start/End: Original strand, 26979400 - 26979907
Alignment:
Q  5 atgcgatatcaatctttgtcatctttatgttgactagcacgaagcaaacctacaatgttcgacccttactttatatcggtaagtaccagaaaggagtttg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26979400 atgcgatatcaatctttgtcatctttatgttgactagcacgaagcaaacctacaatgttcgacccttactttatatcggtaagtaccagcaaggagtttg 26979499  T
Q  105 tctcctaaagcgagaaaattaaaggttgatattgtaatcattcatgatttgttatgcatgtacatataatatcaaccattgatttgttcgtcaaccattt 204  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26979500 tctcctaaatccagaaaattaaaggctgatattgtaatcattcatgatttgttatgcatgtacatataatatcaaccattgatttgttcgtcaactattt 26979599  T
Q  205 aaatttctcatctgctctccaactcactttagagtagccaaatttgcaaactatgtgtttagtttcttaaaccttgaaataattattagttaaacataac 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  26979600 aaatttctcatctgctctccaactcactttagagtagccaaatttgcaaactatgtctttagtttcttaaaccttgaaataattattggttaaacataac 26979699  T
Q  305 atgttatggattttatatttacagagctttgtgttgctctatttgtggaagtattcattattcgtttaacgaatgacgacatagagcaacaaacatggat 404  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26979700 atgttatggattttatatttacagagctttgtgttgctctatttttggaagtattcattattcgtttaacgaatgatgacatagagcaacaaacatggat 26979799  T
Q  405 aataaacaaggtccgattattttttatggtagctgcttcggctcaacttacgtatgctattgtcacatacaggtaagtatacaagcaataaacatttcat 504  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  26979800 aataaacaaggtccgattattttttacggtagctgcttcggctcaacttacgtatgctattgtcacatacaggtaagtatacaactaataaacatttcat 26979899  T
Q  505 tcatatct 512  Q
    ||||||||    
T  26979900 tcatatct 26979907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 496
Target Start/End: Original strand, 27021100 - 27021595
Alignment:
Q  5 atgcgatatcaatctttgtcatctttatgttgactagcacgaagcaaacctacaatgttcgacccttactttatatcggtaagta--ccagaaaggagtt 102  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||  |||  | ||||||    
T  27021100 atgcgatatcaatctttgtcatcttcatgttgactagcacgaagcaaacctacaatgttcaacccttactttatattggtaagtatcccatcacggagtt 27021199  T
Q  103 tgtctcctaaagcgagaaaattaaaggttgatattgtaatcattcatgatttgttatgcatgtacatataatatcaaccattgatttgttcgtcaaccat 202  Q
    |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||  |||||| ||||||||||| ||||||||| ||| ||||| ||    
T  27021200 tgtctcctaaagtgagaaaattaatggttgatattgtaatcatccatgatttgttatagatgtacttataatatcaatcattgatttcttcatcaacaat 27021299  T
Q  203 ttaaatttctcatctgctctccaactcactttagagtagccaaatttgcaaactatgtgtttagtttcttaaaccttgaaataattattagttaaacata 302  Q
    ||||||||||||| | |||||||| ||||| |||||||||||||||| |||| ||||| |||| ||||| |||| | ||| |||||||| ||||||||||    
T  27021300 ttaaatttctcatttactctccaaatcactatagagtagccaaatttacaaattatgtctttactttctaaaacatcgaagtaattattggttaaacata 27021399  T
Q  303 acatgttat--ggattttatatttacagagctttgtgttgctctatttgtggaagtattcattattcgtttaacgaatgacgacatagagcaacaaacat 400  Q
    |||||||||  ||| ||| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||    
T  27021400 acatgttatatggactttttatttacagagctttgtgttgctctctttgtggaagtcttaattattcgtttaacgaatgacgacatagagcaacagacat 27021499  T
Q  401 ggataataaacaaggtccgattattttttatggtagctgcttcggctcaacttacgtatgctattgtcacatacaggtaagtatacaagcaataaa 496  Q
    | |||||||||||||||||||||||||||| |||||||||||| ||||| |||  |||||| ||| |||||||||||||||| |||||||||||||    
T  27021500 gcataataaacaaggtccgattattttttaaggtagctgcttcagctcatcttctgtatgcaattttcacatacaggtaagtgtacaagcaataaa 27021595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 262 - 510
Target Start/End: Complemental strand, 27087035 - 27086787
Alignment:
Q  262 tttagtttcttaaaccttgaaataattattagttaaacataacatgttatggattttatatttacagagctttgtgttgctctatttgtggaagtattca 361  Q
    |||||||||| |||| | ||| ||||||||  ||||||||||||| ||||||| ||| ||||||||||||| ||| |||| || ||||||||||||||||    
T  27087035 tttagtttctaaaacgtcgaattaattattgattaaacataacattttatggactttttatttacagagctatgtcttgccctctttgtggaagtattca 27086936  T
Q  362 ttattcgtttaacgaatgacgacatagagcaacaaacatggataataaacaaggtccgattattttttatggtagctgcttcggctcaacttacgtatgc 461  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  27086935 ttattcgtttaacgaatgacgtcatagagcaacaaacatggataataaacaaggtccggttattttttatggtagctgcttcggctcaacttatgtatgc 27086836  T
Q  462 tattgtcacatacaggtaagtatacaagcaataaacatttcattcatat 510  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27086835 aattgtcacatacaggtaagtatacaagcaataaacgtttcattcatat 27086787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 27087276 - 27087050
Alignment:
Q  9 gatatcaatctttgtcatctttatgttgactagcacgaagcaaacctacaatgttcgacccttactttatatcggtaagt--accagaaaggagtttgtc 106  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||  ||||  ||||||||| ||    
T  27087276 gatatcaatctttgtcgtctttatgttgactagtacgaagcaaacctacaatgttcgacctttactttatattggtaagtaaaccatcaaggagtttttc 27087177  T
Q  107 tcc----------------taaagcgagaaaattaaaggttgatattgtaatcattcatgatttgttatgcatgtacatataatat--caaccattgatt 188  Q
    |||                ||||| ||||||||||| |||||||||| |||||||  | ||||||||||||||| |||||||||||  ||||||||||||    
T  27087176 tcctaaagtgagatgttaataaagtgagaaaattaagggttgatattataatcatctaggatttgttatgcatgcacatataatataacaaccattgatt 27087077  T
Q  189 tgttcgtcaaccatttaaatttctcat 215  Q
    | ||| |||||||||||||||||||||    
T  27087076 tcttcatcaaccatttaaatttctcat 27087050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 443
Target Start/End: Complemental strand, 39747969 - 39747819
Alignment:
Q  294 ttaaacataacatgttatggattttatatttacagagctttgtgttgctctatttgtggaagtattcattattcgtttaacga---atgacgacatagag 390  Q
    |||||||||||| ||||||  || | |||||| ||| |||| || ||||||   || |||| ||||||||| |||||||| ||   ||||| || | |||    
T  39747969 ttaaacataacacgttatg--ttatgtatttatagatctttctgctgctctcgctgcggaaatattcattagtcgtttaatgagtaatgacaacttggag 39747872  T
Q  391 caacaaacatggataataaacaaggtccgattattttttatggtagctgcttc 443  Q
    | ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  39747871 ctacaaacatggataataaacaatgtccgattatttttcatggtagctgcttc 39747819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 39350464 - 39350513
Alignment:
Q  143 cattcatgatttgttatgcatgtacatataatatcaaccattgatttgtt 192  Q
    |||||| ||||| ||||| |||||||| |||||||||||||| |||||||    
T  39350464 cattcaagatttattatgtatgtacatgtaatatcaaccattcatttgtt 39350513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 5 - 512
Target Start/End: Original strand, 34681795 - 34682305
Alignment:
Q  5 atgcgatatcaatctttgtcatctttatgttgactagcacgaagcaaacctacaatgttcgacccttactttatatcggtaagtaccagaaaggagtttg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34681795 atgcgatatcaatctttgtcatctttatgttgactagcacgaagcaaacctacaatgttcgacccttactttatatcggtaagtaccagcaaggagtttg 34681894  T
Q  105 tctcctaaagcgagaaaattaaaggttgatattgtaatcattcatgatttgttatgcatgtacatataatat----caaccattgatttgttcgtcaacc 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    ||||||||||||||||||||||||    
T  34681895 tctcctaacgcgagaaaattaaaggttgatattgtaatcattcatgatttgctatgcatgtacatataatatatatcaaccattgatttgttcgtcaacc 34681994  T
Q  201 atttaaatttctcatctgctctccaactcactttagagtagccaaatttgcaaactatgtgtttagtttcttaaaccttgaaataattattagttaaaca 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||    
T  34681995 atttaaatttctcatctgctctccaactcactttaga-tagccaaatttgccaactatgtctttagtttcttaaacctcaaaataattattagttaaaca 34682093  T
Q  301 taacatgttatggattttatatttacagagctttgtgttgctctatttgtggaagtattcattattcgtttaacgaatgacgacatagagcaacaaacat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34682094 taacatgttatggattttatatttacagagctttgtgttgctctatttgtggaagtattcattattcgtttaacaaatgacgacatagagcaacaaacat 34682193  T
Q  401 ggataataaacaaggtccgattattttttatggtagctgcttcggctcaacttacgtatgctattgtcacatacaggtaagtatacaagcaataaacatt 500  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34682194 ggataataaacaaggtccgattatttttgatggtagctgcttcggctcaacttacgtatgctattgtcacatacaggtaagtatacaagcaataaacatt 34682293  T
Q  501 tcattcatatct 512  Q
    ||||||||||||    
T  34682294 tcattcatatct 34682305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 4e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 322 - 488
Target Start/End: Original strand, 11633167 - 11633333
Alignment:
Q  322 tttacagagctttgtgttgctctatttgtggaagtattcattattcgtttaacgaatgacgacatagagcaacaaacatggataataaacaaggtccgat 421  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  11633167 tttatagagctttgtgttgctctctttgtggaagtattcattattcgtttaacgaatgacgacattgagcaacaaacatggataataaacaacgtccgtt 11633266  T
Q  422 tattttttatggtagctgcttcggctcaacttacgtatgctattgtcacatacaggtaagtatacaa 488  Q
    |||||||||||| ||||||||| | |||||||| |||| | ||| ||||||| ||||||||||||||    
T  11633267 tattttttatggcagctgcttcagttcaacttatgtatacaattttcacatataggtaagtatacaa 11633333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 11632930 - 11633130
Alignment:
Q  5 atgcgatatcaatctttgtcatctttatgttgactagcacgaagcaaacctacaatgttcgacccttactttatatcggtaagta---ccagaaaggagt 101  Q
    |||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||   | | ||  || |    
T  11632930 atgccatatcaatctttgtcatttttatgttgacgagcacaaagcaaacctacaatgttcgacccttactttacatcggtaagtataccgacaagtgatt 11633029  T
Q  102 t---tgtctcctaaagcgagaaaattaaaggttgatattgtaatcattcatgatttgttatgcatgtacatataatatcaaccattgatttgttcgtcaa 198  Q
    |   |||||||||||  ||||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11633030 tgtctgtctcctaaaatgagaaaattaaaggtcgatattgtaatcatcgatcatttgttatgcatgtacatataatatcaaccattgatttgttcatcaa 11633129  T
Q  199 c 199  Q
    |    
T  11633130 c 11633130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 26274064 - 26274019
Alignment:
Q  147 catgatttgttatgcatgtacatataatatcaaccattgatttgtt 192  Q
    ||||||||||||||||||  |||||||||| |||||||| ||||||    
T  26274064 catgatttgttatgcatgcgcatataatattaaccattggtttgtt 26274019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 42196136 - 42196181
Alignment:
Q  147 catgatttgttatgcatgtacatataatatcaaccattgatttgtt 192  Q
    |||||||||||||||||||  ||||||||||||| ||| |||||||    
T  42196136 catgatttgttatgcatgtgaatataatatcaacaattaatttgtt 42196181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 10373659 - 10373584
Alignment:
Q  117 agaaaattaaaggttgatattgtaatcattcatgatttgttatgcatgtacatataatatcaaccattgatttgtt 192  Q
    ||||||| || |||||||||||||| ||||||||||||| ||| |||||  |||||||||||||||||||||||||    
T  10373659 agaaaataaatggttgatattgtaaccattcatgatttggtattcatgtgtatataatatcaaccattgatttgtt 10373584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 19256962 - 19257006
Alignment:
Q  147 catgatttgttatgcatgtacatataatatcaaccattgatttgt 191  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  19256962 catgatttgttatgcaggtacatataatatcaaccattgatttgt 19257006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 35257333 - 35257373
Alignment:
Q  150 gatttgttatgcatgtacatataatatcaaccattgatttg 190  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  35257333 gatttgttatgcatgtgcatataatatcaactattgatttg 35257373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 1550415 - 1550489
Alignment:
Q  115 cgagaaaattaaaggttgatattgtaatcattcatgatttgttatgcatgtacatataatatcaaccattgattt 189  Q
    ||||||||| ||||||||||||||||   | |  ||||||||||||||||| |||||||||||||||||||||||    
T  1550415 cgagaaaatcaaaggttgatattgtagctacttgtgatttgttatgcatgtgcatataatatcaaccattgattt 1550489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 12387951 - 12387878
Alignment:
Q  119 aaaattaaaggttgatattgtaatcattcatgatttgttatgcatgtacatataatatcaaccattgatttgtt 192  Q
    ||||||||||||||||||| ||| ||||||  |||| || ||||||| |||||||||| |||| ||||||||||    
T  12387951 aaaattaaaggttgatattttaaccattcagaatttattttgcatgtgcatataatataaaccgttgatttgtt 12387878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 15252251 - 15252194
Alignment:
Q  129 gttgatattgtaatcattcatgatttgttatgcatgtacatataatatcaaccattga 186  Q
    ||||||||| ||||||  || |||||||||||||||| |||||||||||||| |||||    
T  15252251 gttgatattttaatcacccacgatttgttatgcatgtccatataatatcaactattga 15252194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 42947852 - 42947897
Alignment:
Q  147 catgatttgttatgcatgtacatataatatcaaccattgatttgtt 192  Q
    ||||||||||| | ||| | ||||||||||||||||||||||||||    
T  42947852 catgatttgttttacatttgcatataatatcaaccattgatttgtt 42947897  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 45394604 - 45394551
Alignment:
Q  146 tcatgatttgttatgcatgtacatataatatcaaccattgatttgttcgtcaac 199  Q
    |||||||||||| ||||||| ||||||||||||||  || |||||||| |||||    
T  45394604 tcatgatttgttctgcatgtgcatataatatcaactgttaatttgttcatcaac 45394551  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 36089754 - 36089792
Alignment:
Q  146 tcatgatttgttatgcatgtacatataatatcaaccatt 184  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  36089754 tcatgatttgttatgcatgtacagataatatcaaccatt 36089792  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 22787801 - 22787864
Alignment:
Q  125 aaaggttgatattgtaatcattcatgatttgttatgcatgtacatataatatcaaccattgatt 188  Q
    ||||||||||||| ||| |||  ||||| ||||||| |||| |||||||||||||| |||||||    
T  22787801 aaaggttgatattttaaacatctatgatctgttatgtatgtgcatataatatcaactattgatt 22787864  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 40078705 - 40078663
Alignment:
Q  147 catgatttgttatgcatgtacatataatatcaaccattgattt 189  Q
    |||||||||||||| ||||  ||||||||||||||||||||||    
T  40078705 catgatttgttatgtatgtgtatataatatcaaccattgattt 40078663  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 34148857 - 34148816
Alignment:
Q  151 atttgttatgcatgtacatataatatcaaccattgatttgtt 192  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||    
T  34148857 atttgttattcatgtgcatataatatcaaccattgatgtgtt 34148816  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 32021348 - 32021376
Alignment:
Q  116 gagaaaattaaaggttgatattgtaatca 144  Q
    |||||||||||||||||||||||||||||    
T  32021348 gagaaaattaaaggttgatattgtaatca 32021376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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