View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17474_low_12 (Length: 424)

Name: NF17474_low_12
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17474_low_12
NF17474_low_12
[»] chr1 (2 HSPs)
chr1 (27-248)||(41180684-41180916)
chr1 (263-414)||(41180968-41181119)
[»] chr3 (3 HSPs)
chr3 (60-150)||(43339893-43339983)
chr3 (274-341)||(9256425-9256492)
chr3 (165-254)||(43339980-43340068)
[»] chr8 (1 HSPs)
chr8 (274-348)||(15218145-15218219)
[»] chr4 (1 HSPs)
chr4 (274-348)||(27453028-27453102)
[»] chr2 (1 HSPs)
chr2 (274-348)||(45329517-45329591)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 27 - 248
Target Start/End: Original strand, 41180684 - 41180916
Alignment:
Q  27 aatcaagttgatgatgctctagccaagaatgggcaggggcctgccttgttatcttcacaatggtggccagccccacctactttcttacttcctcttcttc 126  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41180684 aatcaagttgatgatgctctagacaagaatgggcaggggcttgccttgttatcttcacaatggtggccagccccacctactttcttacttcctcttcttc 41180783  T
Q  127 ttagagatagtgctggtttatctgtttc-----------tagattgatttctgccctc-tttgtttgaggtgctttgttcttaannnnnnngcttttggt 214  Q
     ||||||||||||||||||||| |||||           ||||||||||||||||||| ||||||||||||||||||||||| |       |||||||||    
T  41180784 atagagatagtgctggtttatccgtttctaaattgattttagattgatttctgccctcttttgtttgaggtgctttgttctt-atttttctgcttttggt 41180882  T
Q  215 tggtttgtaatgtggtaactgttgtacttgggtt 248  Q
    ||||||||||||||||||||||||||||||||||    
T  41180883 tggtttgtaatgtggtaactgttgtacttgggtt 41180916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 263 - 414
Target Start/End: Original strand, 41180968 - 41181119
Alignment:
Q  263 gttcgcgaaaaatgtggaaacccttaattatttttcattgcaatcagacggcaatgcagtggccattgctcatttgacattgtacttaggttatacggtt 362  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41180968 gttcacgaaaaatgtgggaacccttaattatttttcattgcaatcaaacggcaatgcagtggccactgctcatttgacattgtacttaggttatacggtt 41181067  T
Q  363 tgttgctttttgacaacaacctagccttcataatattgcatattcgattcat 414  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  41181068 tgttgctttttgacaacaacctagccttcatactattgtatattcgattcat 41181119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 43339893 - 43339983
Alignment:
Q  60 caggggcctgccttgttatcttcacaatggtggccagccccacctactttcttacttcctcttcttcttagagatagtgctggtttatctg 150  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  43339893 caggggcttgccttgttatcttcacaatggtggccagccccacctactttcttactttctcttcttcttagggatagtgctggtttatctg 43339983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 9256492 - 9256425
Alignment:
Q  274 atgtggaaacccttaattatttttcattgcaatcagacggcaatgcagtggccattgctcatttgaca 341  Q
    |||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |||||    
T  9256492 atgtgggaacccttacttatttttcattgcattcagacggcaatgcagtggcccttgctcatctgaca 9256425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 43339980 - 43340068
Alignment:
Q  165 tctgccctctttgtttgaggtgctttgttcttaannnnnnngcttttggttggtttgtaatgtggtaactgttgtacttgggttcaggcc 254  Q
    |||||||||||||||||||||||||||| |||         |||||||||| |||||||||||| |||||||||||||||| ||||||||    
T  43339980 tctgccctctttgtttgaggtgctttgt-ctttgtttctttgcttttggtttgtttgtaatgtgataactgttgtacttggattcaggcc 43340068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 15218145 - 15218219
Alignment:
Q  274 atgtggaaacccttaattatttttcattgcaatcagacggcaatgcagtggccattgctcatttgacattgtact 348  Q
    |||||| |||||||  |||||||||| | ||  ||| ||||||||||| |||| |||||||||||||| ||||||    
T  15218145 atgtgggaacccttgcttatttttcactacatccaggcggcaatgcagcggcccttgctcatttgacactgtact 15218219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 27453028 - 27453102
Alignment:
Q  274 atgtggaaacccttaattatttttcattgcaatcagacggcaatgcagtggccattgctcatttgacattgtact 348  Q
    ||||||||||||||  |||||||||| | ||  ||| |||  |||||| |||| |||||||||||||||||||||    
T  27453028 atgtggaaacccttgcttatttttcactacatccaggcggtgatgcagcggcccttgctcatttgacattgtact 27453102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 45329517 - 45329591
Alignment:
Q  274 atgtggaaacccttaattatttttcattgcaatcagacggcaatgcagtggccattgctcatttgacattgtact 348  Q
    |||||| |||||||  |||||||||| | ||  |||||||| ||||||||||| ||| |||||||||| ||||||    
T  45329517 atgtgggaacccttgcttatttttcactacatccagacggcgatgcagtggcccttgttcatttgacactgtact 45329591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University