View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_low_16 (Length: 393)
Name: NF17474_low_16
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 7677096 - 7676717
Alignment:
| Q |
1 |
atgaatgaatatcgttt-atttttatgagaaaaaatatatatttcgaacgcatttagtgtcgtgactccgtcaaaaacaaccacgtgatgtgcaacgctg |
99 |
Q |
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| T |
7677096 |
atgaatgaatatggttttatttttgtgaaaaaaaataaatctttgtgacgcatatagtatcgtgactccgtgaaaaacaaccacgtgatgtgcaacgctg |
7676997 |
T |
|
| Q |
100 |
cgaagtttctttcacatttctaa-tttctttttgttcaagatttctttcacatatttactagaagtgggaaatcttctactttaacttcgtagctatttt |
198 |
Q |
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| T |
7676996 |
cgaagtttctttcacatttctttgtttttttttgttcaagatttctttcacatatttactagaagtgggaaatcttctactttaacttcgtagctatttt |
7676897 |
T |
|
| Q |
199 |
tatattttagtcgagcaggtgtgaaaacattataaattacataaaacaagatttgaacacaaatttccatctccatacaccacaaaattgagcattttac |
298 |
Q |
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| T |
7676896 |
tatattttagtcgagcaggggtgaaaaaattataaattacataaaacaagatttgaacacaaatttccatctccatacaccacaaaattgagcattttac |
7676797 |
T |
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| Q |
299 |
caactatgatgtgctatttgacagcttatataagtttttatgtacgttgttcactaatactaaatattcaattacttccaat |
380 |
Q |
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| T |
7676796 |
caactatgatgtgctatttgacagct--tataagtttttatgtacgttgttcactaatactaaatattcaattacttccaat |
7676717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42106568 - 42106608
Alignment:
| Q |
1 |
atgaatgaatatcgtttatttttatgagaaaaaatatatat |
41 |
Q |
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| T |
42106568 |
atgaatgaatatcatttatttttatcaaaaaaaatatatat |
42106608 |
T |
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