View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17474_low_2 (Length: 684)

Name: NF17474_low_2
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17474_low_2
NF17474_low_2
[»] chr4 (8 HSPs)
chr4 (21-545)||(45991105-45991601)
chr4 (580-668)||(55479804-55479892)
chr4 (611-668)||(9321795-9321851)
chr4 (611-668)||(9376274-9376330)
chr4 (610-667)||(34104903-34104959)
chr4 (600-668)||(12225795-12225862)
chr4 (628-668)||(32384873-32384913)
chr4 (588-668)||(19119641-19119720)
[»] chr1 (4 HSPs)
chr1 (51-394)||(46151141-46151487)
chr1 (569-668)||(52691101-52691199)
chr1 (562-668)||(44762096-44762201)
chr1 (415-449)||(46151108-46151142)
[»] chr5 (4 HSPs)
chr5 (550-668)||(17431076-17431193)
chr5 (550-668)||(41612264-41612381)
chr5 (467-545)||(40045274-40045354)
chr5 (604-650)||(4421409-4421454)
[»] chr7 (3 HSPs)
chr7 (550-668)||(35552847-35552964)
chr7 (550-668)||(19914249-19914366)
chr7 (610-667)||(39474540-39474596)
[»] chr2 (6 HSPs)
chr2 (550-668)||(40109914-40110031)
chr2 (550-668)||(19469346-19469463)
chr2 (553-668)||(11580002-11580116)
chr2 (550-668)||(18845092-18845209)
chr2 (576-668)||(12562586-12562677)
chr2 (610-651)||(7300259-7300299)
[»] chr6 (2 HSPs)
chr6 (553-668)||(25349787-25349901)
chr6 (553-662)||(26513294-26513402)
[»] chr3 (4 HSPs)
chr3 (550-668)||(53940882-53941000)
chr3 (562-668)||(34294249-34294354)
chr3 (588-668)||(34434315-34434394)
chr3 (588-651)||(31770164-31770226)
[»] chr8 (6 HSPs)
chr8 (550-668)||(25192653-25192770)
chr8 (558-668)||(25879079-25879188)
chr8 (565-668)||(31639971-31640074)
chr8 (551-668)||(39432187-39432303)
chr8 (562-668)||(42579916-42580021)
chr8 (394-449)||(3871120-3871175)


Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 21 - 545
Target Start/End: Complemental strand, 45991601 - 45991105
Alignment:
Q  21 cccgtaagagctactttagcaaatttttgatgggtgtagcaacactagttaactctcttttcttccccaaatttctctcaaaaaccataaatcaaaaacc 120  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||              ||||||    
T  45991601 cccgtaagtgctactttagcaaatttttgatgggtgtagcaacactagttaactctcttttctttcccaaatttctctca--------------aaaacc 45991516  T
Q  121 caacacaactataatcaaacctttgaataagcaaaccaaaccaaagaaacaaaggacaaccagtggttttaaaacagaacccagcatcaatcgcagaaac 220  Q
    |||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45991515 caacacaactataatcaaacc----------------aaaccaaagaaacaaaggacaaccagtggttttaaaacagaacccagcatcaatcgcagaaac 45991432  T
Q  221 gttgagaaaattcgcaaattagagcgaatccaatcacaacacacaaacccagaacgcagcttcaaggacaaaacaaccctgatcctaaaacaaggcaacc 320  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45991431 gttgagaaaattcgcaaatctgagcgaatccaatcacaacacacaaacccagaacgcagcttcaaggacaaaacaacccttatcctaaaacaaggcaacc 45991332  T
Q  321 accgctagaaggaggagaacgagattagaataactccattttccaatcaaaagatatcagtgatagaacaacaaaatcgatccccacaactaataattgg 420  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45991331 accgctagaaggaggagaacgagattagaacaactccattttccaatcaaaagatatcagtgatagaacaacaaaattgatccccacaactaataattgg 45991232  T
Q  421 aagaaggagaagttacatattataacattggtgcacgttgtattcgacacctttgtattttctctc--tgtgttccaagttttggtggttcttccacgtt 518  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||    
T  45991231 aagaaggagaagttacatattatgacattggtgcacgttgtattcgacacctttgtattttctctctttgtgttccaagttttggtggttcttccacctt 45991132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 580 - 668
Target Start/End: Complemental strand, 55479892 - 55479804
Alignment:
Q  580 aatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaa-ttttgtaaatatt 668  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||    
T  55479892 aatgccttgtttgtgcatgacactcagttgtggtggtcgga-ccctatgttatgtctgggtatcgactgaccgtaatttttgtaaatatt 55479804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 611 - 668
Target Start/End: Original strand, 9321795 - 9321851
Alignment:
Q  611 ggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatatt 668  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||    
T  9321795 ggtggtcggaccc-tatgttatgtttgagtatcgactgaccgtacttttgtaaatatt 9321851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 611 - 668
Target Start/End: Original strand, 9376274 - 9376330
Alignment:
Q  611 ggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatatt 668  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||    
T  9376274 ggtggtcggaccc-tatgttatgtttgagtatcgactgaccgtacttttgtaaatatt 9376330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 610 - 667
Target Start/End: Complemental strand, 34104959 - 34104903
Alignment:
Q  610 tggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatat 667  Q
    |||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||    
T  34104959 tggtggtcggaccctt-tgttatgtttgggtatcgactgaccgtatttttgtacatat 34104903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 668
Target Start/End: Original strand, 12225795 - 12225862
Alignment:
Q  600 cactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatatt 668  Q
    |||| ||||||||||||||||||| ||| || | | |||||||||||||||| | ||||||||||||||    
T  12225795 cacttagatgtggtggtcggaccc-tatattttatctgggtatcgactgacctttattttgtaaatatt 12225862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 628 - 668
Target Start/End: Original strand, 32384873 - 32384913
Alignment:
Q  628 gttatgtttgggtatcgactgaccgtaattttgtaaatatt 668  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  32384873 gttatgtctgggtatcgactgactgtaattttgtaaatatt 32384913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 668
Target Start/End: Complemental strand, 19119720 - 19119641
Alignment:
Q  588 gtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatatt 668  Q
    ||||||||| |||||| |||  |||||||| ||||  | |||||||| ||||||||||||||||||  ||| |||||||||    
T  19119720 gtttgtgcacgacacttagagttggtggtcagaccttt-tgttatgtctgggtatcgactgaccgttgtttagtaaatatt 19119641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 51 - 394
Target Start/End: Complemental strand, 46151487 - 46151141
Alignment:
Q  51 tgggtgtagcaacactagttaactctcttttcttccccaaatttctctcaaaaaccataaatcaaaaacccaacacaactataatcaaacctttgaataa 150  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  46151487 tgggtgtagcaacactagttaactctcttttcttccccagatttctctcaaaaaccataaatcaaa--cccaacacaactataatcaaacctttgaataa 46151390  T
Q  151 gcaaaccaaaccaaagaaacaaaggacaaccagtggttttaaaacagaacccagcatcaatcgcagaaacgttgagaaaattcgcaaattagagcgaatc 250  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  46151389 gcaaaccaaaccaaagaaacaaaggacagccggtggttttaaaacagaacccagcatcaatcgcataaacgttgagaaaattcgcaaatctgagcgaatc 46151290  T
Q  251 caatcacaacaca-----caaacccagaacgcagcttcaaggacaaaacaaccctgatcctaaaacaaggcaaccaccgctagaaggaggagaacgagat 345  Q
    ||||||||| |||     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  46151289 caatcacaaaacaagattcaaacccagaacgcagcttcaaggacaaaacacccctgatcctaaaacaaggcaaccaccgctagaaggaggagaacgagac 46151190  T
Q  346 tagaataactccattttccaatcaaaagatatcagtgatagaacaacaa 394  Q
     |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  46151189 cagaacaactccattttccaatcaaaagataacagtgatagaacaacaa 46151141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 569 - 668
Target Start/End: Complemental strand, 52691199 - 52691101
Alignment:
Q  569 tacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatatt 668  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  52691199 tacaagctaataatgtcttgtttgtgcatgacactcagatgtggtggtcggaccc-tatgttatgtctgggtatcgactgaccgtaattttgtaaatatt 52691101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 562 - 668
Target Start/End: Complemental strand, 44762201 - 44762096
Alignment:
Q  562 tggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgt 661  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||| | | || |||    
T  44762201 tggtggttaaaggctaataatgcattgtttgtgcatggcactcagatgtgctggtc-gaaccctatgttatgtttgggtatcgactgactgaacttgtgt 44762103  T
Q  662 aaatatt 668  Q
    |||||||    
T  44762102 aaatatt 44762096  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 449
Target Start/End: Complemental strand, 46151142 - 46151108
Alignment:
Q  415 aattggaagaaggagaagttacatattataacatt 449  Q
    ||||||||||||||||||||||||||||| |||||    
T  46151142 aattggaagaaggagaagttacatattatgacatt 46151108  T

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Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 550 - 668
Target Start/End: Complemental strand, 17431193 - 17431076
Alignment:
Q  550 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 649  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17431193 ttccattctttatggtggttagaggctaataatgccttgtttgtgcatgacactcagatgtggtggtcgga-ccctatgttatgtttgggtatcgactga 17431095  T
Q  650 ccgtaattttgtaaatatt 668  Q
    |||||||||||||||||||    
T  17431094 ccgtaattttgtaaatatt 17431076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 550 - 668
Target Start/End: Complemental strand, 41612381 - 41612264
Alignment:
Q  550 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 649  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||| ||||||||||||| ||||||||||||||    
T  41612381 ttccattctttatggtggttacaggctaataatgccttgtttgtgcacggcactcaaatgtggtggtcgga-ccctatgttatgtctgggtatcgactga 41612283  T
Q  650 ccgtaattttgtaaatatt 668  Q
    |||||||||||||||||||    
T  41612282 ccgtaattttgtaaatatt 41612264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 467 - 545
Target Start/End: Complemental strand, 40045354 - 40045274
Alignment:
Q  467 acacctttgtattttctctct--gtgttccaagttttggtggttcttccacgttcttggctaataaattttgcagattcaa 545  Q
    |||||||| |||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  40045354 acacctttctattttatctctttgtgttccaagttttggtggttcttccaccttcttggctaataaattttgccgattcaa 40045274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 604 - 650
Target Start/End: Complemental strand, 4421454 - 4421409
Alignment:
Q  604 cagatgtggtggtcggacccctatgttatgtttgggtatcgactgac 650  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||||    
T  4421454 cagatgtggtggtcgaatccct-tgttatgtttgggtatcgactgac 4421409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 550 - 668
Target Start/End: Complemental strand, 35552964 - 35552847
Alignment:
Q  550 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 649  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  35552964 ttccattctttatggtggttacaggctaataatgccttgtttgtgcatggcactcagatgtggtggtcgga-ccctatgttatgtctgggtatcgactga 35552866  T
Q  650 ccgtaattttgtaaatatt 668  Q
    | |||||||||||||||||    
T  35552865 ctgtaattttgtaaatatt 35552847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 550 - 668
Target Start/End: Complemental strand, 19914366 - 19914249
Alignment:
Q  550 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 649  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||  | |||||||||  || |||||||||||    
T  19914366 ttccattctttatggtggttacaggttaataatgccttgtttgtgcatgacactcagatgtggtggtcgga-tcttatgttatgactgagtatcgactga 19914268  T
Q  650 ccgtaattttgtaaatatt 668  Q
    | |||||||||||||||||    
T  19914267 ctgtaattttgtaaatatt 19914249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 667
Target Start/End: Original strand, 39474540 - 39474596
Alignment:
Q  610 tggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatat 667  Q
    |||||||||||||| | ||||||| |||||||| ||||||||||| ||||||| ||||    
T  39474540 tggtggtcggaccctt-tgttatgcttgggtattgactgaccgtatttttgtacatat 39474596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 550 - 668
Target Start/End: Complemental strand, 40110031 - 40109914
Alignment:
Q  550 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 649  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  40110031 ttccattctttatggtggttacaggctaataatgccttgtttgtgcatgacacttagatgtggtggtcgga-ccctatgttatgtctgggtatcgactga 40109933  T
Q  650 ccgtaattttgtaaatatt 668  Q
    |||||||||| ||||||||    
T  40109932 ccgtaattttataaatatt 40109914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 550 - 668
Target Start/End: Original strand, 19469346 - 19469463
Alignment:
Q  550 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 649  Q
    ||||||| |||||| ||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||  |||||||||||| || |||||||||||    
T  19469346 ttccattctttatgatggctacaagctaataatgccttgtttgtgcatgacactcacatgtggtggtcgga-tcctatgttatgtctgagtatcgactga 19469444  T
Q  650 ccgtaattttgtaaatatt 668  Q
    ||||| |||||||||||||    
T  19469445 ccgtacttttgtaaatatt 19469463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 553 - 668
Target Start/End: Original strand, 11580002 - 11580116
Alignment:
Q  553 cattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccg 652  Q
    |||| ||| |||||| || |||||||||| || | |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |    
T  11580002 cattctttgtggtggctaaaggctaataacgcctcgtttgtgcatgacactcagatgtggtggtc-gaaccctatgttatgtttgggtatcgactgactg 11580100  T
Q  653 taattttgtaaatatt 668  Q
     | |||||||||||||    
T  11580101 aacttttgtaaatatt 11580116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 550 - 668
Target Start/End: Original strand, 18845092 - 18845209
Alignment:
Q  550 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 649  Q
    ||||||| |||||||| | | ||| |||||||||| |||||||||||||  ||||||||||| |||||||| ||||||||||||| | ||||||||||||    
T  18845092 ttccattctttatggtagctgcagactaataatgccttgtttgtgcatggtactcagatgtgatggtcgga-ccctatgttatgtctaggtatcgactga 18845190  T
Q  650 ccgtaattttgtaaatatt 668  Q
    ||||| |||||||||||||    
T  18845191 ccgtacttttgtaaatatt 18845209  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 668
Target Start/End: Complemental strand, 12562677 - 12562586
Alignment:
Q  576 taataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatatt 668  Q
    ||||||||| | |||| ||||||| ||| |||||||||||| ||| || |||||||| | |||||||||||||||| || || ||||||||||    
T  12562677 taataatgcctggtttttgcatgagactgagatgtggtggttggatcc-tatgttatatctgggtatcgactgaccatagttgtgtaaatatt 12562586  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 651
Target Start/End: Complemental strand, 7300299 - 7300259
Alignment:
Q  610 tggtggtcggacccctatgttatgtttgggtatcgactgacc 651  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  7300299 tggtggtcggaccctt-tgttatgtttgggtatcgactgacc 7300259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 553 - 668
Target Start/End: Complemental strand, 25349901 - 25349787
Alignment:
Q  553 cattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccg 652  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||     
T  25349901 cattctttatggtggttacatgctaataatgccttgtttgtgcatggcactcagatgtggtggtcgga-ccctatgttatgtctgggtatcgactgacca 25349803  T
Q  653 taattttgtaaatatt 668  Q
    ||||||||||||||||    
T  25349802 taattttgtaaatatt 25349787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 553 - 662
Target Start/End: Complemental strand, 26513402 - 26513294
Alignment:
Q  553 cattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccg 652  Q
    |||| ||| ||||||||| ||||||||||||| | |||| |||| | ||| ||||||||||||||||| ||| ||||||| | |||||||||||||||||    
T  26513402 cattctttgtggtggttaaaggctaataatgcctcgtttatgcacggcacacagatgtggtggtcgga-cccaatgttatttctgggtatcgactgaccg 26513304  T
Q  653 taattttgta 662  Q
    || |||||||    
T  26513303 tacttttgta 26513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 550 - 668
Target Start/End: Complemental strand, 53941000 - 53940882
Alignment:
Q  550 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 649  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||    
T  53941000 ttccattctttatggtggttacaggctaataatgccttgtttgtgcatggcactcagttgtggtggtcgga-ccctatgttatgtctgggtatcgactga 53940902  T
Q  650 ccgtaa-ttttgtaaatatt 668  Q
    |||||| |||||||||||||    
T  53940901 ccgtaatttttgtaaatatt 53940882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 562 - 668
Target Start/End: Original strand, 34294249 - 34294354
Alignment:
Q  562 tggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgt 661  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||||| || |||||| |||||||||||||||||||||| | | || |||    
T  34294249 tggtggttaaaggctaataatgccttgtttgtgcatggcactcagatatggtggtc-gaaccctatcttatgtttgggtatcgactgactgaacttgtgt 34294347  T
Q  662 aaatatt 668  Q
    |||||||    
T  34294348 aaatatt 34294354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 588 - 668
Target Start/End: Original strand, 34434315 - 34434394
Alignment:
Q  588 gtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatatt 668  Q
    ||||||||| ||||||||||||||||||||| |||| | |||||||||||||||||||||||| ||| |||||||||||||    
T  34434315 gtttgtgcacgacactcagatgtggtggtcgaaccctt-tgttatgtttgggtatcgactgactgtagttttgtaaatatt 34434394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 588 - 651
Target Start/End: Original strand, 31770164 - 31770226
Alignment:
Q  588 gtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgacc 651  Q
    ||||||| ||||||||||||  ||||||||||| ||||||||| ||||||||| ||||||||||    
T  31770164 gtttgtgtatgacactcagagatggtggtcgga-ccctatgttgtgtttgggtttcgactgacc 31770226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 550 - 668
Target Start/End: Complemental strand, 25192770 - 25192653
Alignment:
Q  550 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 649  Q
    ||||||| |||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||| ||||||||||||||    
T  25192770 ttccattatttatggtggctacaagctaataatgccttgtttgtgcatggcactcagatgtggtggtcgta-ccctatgttatgtctgggtatcgactga 25192672  T
Q  650 ccgtaattttgtaaatatt 668  Q
    ||||| |||||||||||||    
T  25192671 ccgtacttttgtaaatatt 25192653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 558 - 668
Target Start/End: Complemental strand, 25879188 - 25879079
Alignment:
Q  558 tttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaatt 657  Q
    ||||||||||||||||||||||||||  || ||||||||||  |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  25879188 tttatggtggttacaggctaataatgtcttctttgtgcatggtactcagatgtggtggtcgga-ccctatgttatgtatgggtatcgactaaccgtaatt 25879090  T
Q  658 ttgtaaatatt 668  Q
    |||||||||||    
T  25879089 ttgtaaatatt 25879079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 565 - 668
Target Start/End: Original strand, 31639971 - 31640074
Alignment:
Q  565 tggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaa-ttttgtaa 663  Q
    |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  31639971 tggttacaggttaataatgccttgtttgtgcatgacactcagttgtggtggtcgga-ccctatgttatgtctgggtatcgactgaccgtaatttttgtaa 31640069  T
Q  664 atatt 668  Q
    |||||    
T  31640070 atatt 31640074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 551 - 668
Target Start/End: Complemental strand, 39432303 - 39432187
Alignment:
Q  551 tccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgac 650  Q
    |||||| |||||||||| |||| ||||||||||  |||||||||||||| ||||||||||||| ||| || ||||||||||||| |||||||||||||||    
T  39432303 tccattctttatggtggctacaagctaataatgtcttgtttgtgcatgatactcagatgtggtcgtcaga-ccctatgttatgtctgggtatcgactgac 39432205  T
Q  651 cgtaattttgtaaatatt 668  Q
    | || |||||||||||||    
T  39432204 catacttttgtaaatatt 39432187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 562 - 668
Target Start/End: Original strand, 42579916 - 42580021
Alignment:
Q  562 tggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgt 661  Q
    |||||| || ||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||| ||| |||| |    
T  42579916 tggtggctaaaggctaataatgcctcgtttgtgcatgacactcagatgtggtggtc-gaaccctatgttatgtttggatatcgattgactgtacttttat 42580014  T
Q  662 aaatatt 668  Q
    |||||||    
T  42580015 aaatatt 42580021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 449
Target Start/End: Complemental strand, 3871175 - 3871120
Alignment:
Q  394 aaatcgatccccacaactaataattggaagaaggagaagttacatattataacatt 449  Q
    |||| ||||||||||||||  ||||||||||||||||| |||| |||||| |||||    
T  3871175 aaattgatccccacaactatcaattggaagaaggagaacttacttattatgacatt 3871120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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