View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17474_low_22 (Length: 333)

Name: NF17474_low_22
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17474_low_22
NF17474_low_22
[»] chr3 (23 HSPs)
chr3 (19-328)||(39670113-39670418)
chr3 (19-94)||(51419283-51419358)
chr3 (21-81)||(9563103-9563163)
chr3 (19-83)||(11347856-11347920)
chr3 (19-94)||(41189687-41189762)
chr3 (19-94)||(26141453-26141530)
chr3 (19-83)||(33644302-33644366)
chr3 (19-83)||(49607516-49607580)
chr3 (19-83)||(53982113-53982177)
chr3 (19-94)||(20764838-20764913)
chr3 (19-60)||(36707385-36707426)
chr3 (19-83)||(31456791-31456855)
chr3 (19-83)||(52629402-52629466)
chr3 (19-83)||(54868829-54868893)
chr3 (23-94)||(26754801-26754872)
chr3 (19-94)||(47531967-47532042)
chr3 (23-94)||(48375629-48375700)
chr3 (24-67)||(1758407-1758449)
chr3 (23-94)||(8076499-8076570)
chr3 (28-94)||(42823222-42823288)
chr3 (24-94)||(43746446-43746516)
chr3 (24-77)||(21746128-21746181)
chr3 (30-83)||(33118784-33118837)
[»] chr8 (21 HSPs)
chr8 (19-90)||(42710221-42710292)
chr8 (19-94)||(43414504-43414579)
chr8 (19-83)||(34012230-34012294)
chr8 (19-83)||(14548024-14548088)
chr8 (18-94)||(37038580-37038656)
chr8 (19-83)||(40423877-40423941)
chr8 (23-94)||(5957936-5958007)
chr8 (19-83)||(504055-504119)
chr8 (19-67)||(12831149-12831197)
chr8 (19-83)||(15048115-15048179)
chr8 (19-83)||(23122531-23122595)
chr8 (19-78)||(9122287-9122346)
chr8 (19-77)||(15197435-15197493)
chr8 (19-60)||(1179897-1179938)
chr8 (19-67)||(44507037-44507085)
chr8 (19-94)||(4854786-4854861)
chr8 (23-94)||(15258852-15258923)
chr8 (28-94)||(30479397-30479463)
chr8 (28-94)||(32032835-32032901)
chr8 (28-94)||(34307327-34307393)
chr8 (19-79)||(25838291-25838351)
[»] chr6 (14 HSPs)
chr6 (19-94)||(31110684-31110759)
chr6 (19-83)||(17598656-17598720)
chr6 (19-94)||(31976350-31976425)
chr6 (19-83)||(11427720-11427784)
chr6 (19-83)||(32869780-32869844)
chr6 (19-90)||(22880585-22880656)
chr6 (19-83)||(29857929-29857993)
chr6 (19-81)||(6209402-6209463)
chr6 (19-77)||(23128067-23128125)
chr6 (19-60)||(946478-946519)
chr6 (19-83)||(15832679-15832743)
chr6 (23-83)||(30870120-30870180)
chr6 (28-94)||(15989965-15990031)
chr6 (28-94)||(30341283-30341349)
[»] chr5 (19 HSPs)
chr5 (19-83)||(36732876-36732940)
chr5 (19-94)||(15409533-15409608)
chr5 (19-83)||(18520818-18520882)
chr5 (19-83)||(33149572-33149636)
chr5 (19-83)||(35785301-35785365)
chr5 (19-83)||(2740376-2740440)
chr5 (19-67)||(6679800-6679848)
chr5 (19-83)||(14831916-14831980)
chr5 (18-94)||(31009089-31009165)
chr5 (19-83)||(40145509-40145573)
chr5 (19-67)||(26720618-26720666)
chr5 (19-67)||(26990367-26990415)
chr5 (31-83)||(31132448-31132500)
chr5 (23-94)||(21370110-21370181)
chr5 (28-94)||(2252091-2252157)
chr5 (28-94)||(3921188-3921254)
chr5 (22-83)||(13811757-13811818)
chr5 (19-56)||(28177877-28177914)
chr5 (19-59)||(39557475-39557515)
[»] chr2 (26 HSPs)
chr2 (19-83)||(17473122-17473186)
chr2 (19-83)||(19930754-19930818)
chr2 (19-83)||(28863557-28863621)
chr2 (19-94)||(2533225-2533300)
chr2 (19-83)||(7465669-7465733)
chr2 (19-83)||(13438445-13438509)
chr2 (19-83)||(42257295-42257359)
chr2 (23-94)||(20700921-20700992)
chr2 (19-94)||(36168938-36169013)
chr2 (19-94)||(40613825-40613900)
chr2 (19-77)||(4060787-4060845)
chr2 (19-81)||(9058582-9058644)
chr2 (19-83)||(10249316-10249380)
chr2 (19-83)||(28381589-28381653)
chr2 (19-83)||(40701580-40701644)
chr2 (23-94)||(3440085-3440156)
chr2 (24-61)||(17819960-17819997)
chr2 (19-76)||(30915565-30915622)
chr2 (18-67)||(32505598-32505647)
chr2 (19-60)||(38273099-38273140)
chr2 (23-67)||(33436050-33436094)
chr2 (28-94)||(3034906-3034972)
chr2 (24-94)||(17823895-17823965)
chr2 (24-94)||(44152034-44152104)
chr2 (19-60)||(41758689-41758730)
chr2 (19-83)||(21301434-21301498)
[»] chr4 (17 HSPs)
chr4 (19-82)||(480382-480445)
chr4 (19-83)||(41236449-41236513)
chr4 (19-83)||(42044301-42044365)
chr4 (19-94)||(41823984-41824059)
chr4 (23-94)||(50052351-50052422)
chr4 (19-83)||(24995041-24995105)
chr4 (18-94)||(50526094-50526170)
chr4 (19-77)||(11511402-11511460)
chr4 (19-67)||(6034146-6034194)
chr4 (19-67)||(40574881-40574929)
chr4 (19-83)||(48182983-48183047)
chr4 (19-83)||(54473467-54473531)
chr4 (23-94)||(29239992-29240063)
chr4 (19-94)||(31910294-31910369)
chr4 (19-59)||(23608337-23608377)
chr4 (19-57)||(29234205-29234243)
chr4 (23-60)||(56300122-56300159)
[»] chr1 (18 HSPs)
chr1 (19-94)||(32813349-32813424)
chr1 (19-83)||(27564669-27564733)
chr1 (19-83)||(37649300-37649364)
chr1 (19-83)||(38632255-38632319)
chr1 (19-94)||(49811450-49811525)
chr1 (19-83)||(41758907-41758971)
chr1 (19-83)||(48716216-48716280)
chr1 (18-94)||(51898606-51898682)
chr1 (19-76)||(3000421-3000478)
chr1 (19-76)||(38595256-38595313)
chr1 (19-67)||(2582017-2582065)
chr1 (19-67)||(45044510-45044558)
chr1 (19-60)||(37926395-37926436)
chr1 (19-67)||(9474826-9474874)
chr1 (19-83)||(47452254-47452318)
chr1 (19-67)||(50630560-50630608)
chr1 (28-83)||(26274540-26274595)
chr1 (24-94)||(6260977-6261047)
[»] chr7 (24 HSPs)
chr7 (19-83)||(19329944-19330008)
chr7 (19-75)||(26296746-26296802)
chr7 (19-83)||(38837319-38837383)
chr7 (19-94)||(35522978-35523053)
chr7 (19-77)||(31735979-31736037)
chr7 (19-83)||(8080317-8080381)
chr7 (23-83)||(11044284-11044344)
chr7 (19-94)||(46033724-46033799)
chr7 (19-77)||(38267142-38267200)
chr7 (24-94)||(41423789-41423859)
chr7 (26-94)||(12311013-12311081)
chr7 (19-83)||(40957809-40957873)
chr7 (31-94)||(16374747-16374810)
chr7 (19-60)||(3784097-3784138)
chr7 (19-67)||(4999464-4999512)
chr7 (19-67)||(32951443-32951491)
chr7 (19-67)||(35137635-35137683)
chr7 (34-94)||(46374747-46374807)
chr7 (23-94)||(21234507-21234578)
chr7 (19-73)||(3694469-3694523)
chr7 (28-94)||(22343472-22343538)
chr7 (28-94)||(41915852-41915918)
chr7 (31-83)||(3434666-3434718)
chr7 (19-67)||(19436137-19436185)
[»] scaffold0316 (1 HSPs)
scaffold0316 (23-94)||(17209-17280)
[»] scaffold0321 (1 HSPs)
scaffold0321 (19-83)||(10043-10107)
[»] scaffold0237 (1 HSPs)
scaffold0237 (19-83)||(4131-4195)
[»] scaffold1268 (1 HSPs)
scaffold1268 (23-94)||(852-923)
[»] scaffold1267 (1 HSPs)
scaffold1267 (23-94)||(852-923)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 39670113 - 39670418
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacatctatgttgttatttaaaaataaat 118  Q
    |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| | ||| ||||||||||    ||||||||||||||||||||    
T  39670113 ttttctctcctcttctctcttcttaatgtatgagatgtacaagggtgtacggaaataaatgatgtctgtgtaacat----gttgttatttaaaaataaat 39670208  T
Q  119 gaataaaactttaatcttctttgaatcaagtatatgacttccactgttttttgaaatataatgataaatcatcttcctcaatgatcagcaaaattgccat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39670209 gaataaaactttaatcttctttgaatcaagtatatgacttccactgttttttgaaatataatgataaatcatcttcctcaatgatcagcaaaattgccat 39670308  T
Q  219 tttatcaattcaaccattatgtattgtgatgatcaatctttatcatgttagagataaattgcaacacatatgtactctatttcacttgcttcgcatctct 318  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39670309 tttatcaattcaaccattttgtattgtgatgatcaatctttatcatgttagagataaattgcaacacatatgtactctatttcacttgcttcgcatctct 39670408  T
Q  319 tcatctcact 328  Q
    || |||||||    
T  39670409 tcttctcact 39670418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 51419358 - 51419283
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||| ||||| | ||||||||    
T  51419358 ttttctctcctattctctcttcctaatgtatggggtgtacaagggtgtatggaaataaaaggtgtttatgtaacat 51419283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 9563103 - 9563163
Alignment:
Q  21 ttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggt 81  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||    
T  9563103 ttctctcctcttctctcttcctaatgcatgagttgtacaaaggtgtatgggaataaagggt 9563163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 11347920 - 11347856
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||||||| |||||| || |||||| || ||||||||||||    
T  11347920 ttttctctcctcttctctcttcctaatgtatggggtgtataagggtgtatgggaataaagggtgt 11347856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 41189762 - 41189687
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||| |||||||||||||||  ||||||||  ||||| ||||||||||||||| | ||||||||    
T  41189762 ttttctctcctcttctttcttcctaatgtatggagtgtacaagagtgtatggaaataaagggtgtctatgtaacat 41189687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 26141530 - 26141453
Alignment:
Q  19 ttttctctcctcttct--ctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||  |||||||||||||||| |||||||||  ||||| ||||||||||||||| | ||||||||    
T  26141530 ttttctctcctcttctttctcttcctaatgtatggggtgtacaagagtgtatggaaataaagggtgtctatgtaacat 26141453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 33644302 - 33644366
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| |||||| || |||||| || ||||||||||||    
T  33644302 ttttctctcctcttctctcttcctaatgcatggggtgtataagggtgtatgggaataaagggtgt 33644366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 49607516 - 49607580
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||| ||||||||||||| |||| |||||||| |||||| || ||||||||||||    
T  49607516 ttttctctcctcttttctcttcctaatgcatgacgtgtacaagggtgtatgggaataaagggtgt 49607580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 53982113 - 53982177
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| | |||| || ||||||||||||    
T  53982113 ttttctctcctcttctctcttcctaatgcatggggtgtacaaggttgtatgggaataaagggtgt 53982177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 20764913 - 20764838
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |||||| |  |||||| ||||| | ||||||||    
T  20764913 ttttctctcatcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacat 20764838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 36707426 - 36707385
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaa 60  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  36707426 ttttctctcctcttctctcttcctaatgcatgaggtgtacaa 36707385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 31456791 - 31456855
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||| ||||||||||||| ||| ||||||||| |||| | || ||||||||||||    
T  31456791 ttttctctcctcttttctcttcctaatgcatggggtgtacaagggtgcatgggaataaagggtgt 31456855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 52629402 - 52629466
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||| |||||||||||||||||| ||| | ||||||| |||||| |||||||| ||||||    
T  52629402 ttttctctcatcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataatgggtgt 52629466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 54868893 - 54868829
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||| |||||||||||||||||| ||  ||||||||| |||||| ||||||||| |||||    
T  54868893 ttttctctcatcttctctcttcctaatgcatagggtgtacaagggtgtatggaaataaaaggtgt 54868829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 26754801 - 26754872
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||||||   |||  |||||||||||||||| |||||||||| |||| | ||||||||    
T  26754801 ctctcctcttctctcttcctagaatatagggtgtacaaaggtgtatggaaataaagagtgtctatgtaacat 26754872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 47531967 - 47532042
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||| ||||||||||||||||||||   |||||||  ||||| || |||||||||||| | ||||||||    
T  47531967 ttttctctcctattctctcttcctaatgtatggaatgtacaagtgtgtatgggaataaagggtgtttatgtaacat 47532042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 48375700 - 48375629
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||||||   |||  ||||||||||| |||| ||||||||||||||| | ||||||||    
T  48375700 ctctcctcttctctcttcctagaatatagggtgtacaaagatgtatggaaataaagggtgtctatgtaacat 48375629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 1758449 - 1758407
Alignment:
Q  24 tctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  1758449 tctcctcttctctcttcctaatgcatg-ggtgtacaaaggtgta 1758407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 8076499 - 8076570
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||||| || ||| |||||||||| ||||| |  |||||| ||||| | ||||||||    
T  8076499 ctctcctcttctctcttcctagtgcatggggtgtacaaaagtgtatgagaataaatggtgtctatgtaacat 8076570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 42823222 - 42823288
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||  ||||||||||||| |||||| | || |||| ||||| | ||||||||    
T  42823222 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacat 42823288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 43746446 - 43746516
Alignment:
Q  24 tctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||| |||||||| || ||||||||||||| |||||| |  || ||||||||| | ||||||||    
T  43746446 tctcctcttctttcttcctagtgcatgaggtgtacaagggtgtatgacaacaaagggtgtttatgtaacat 43746516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 21746181 - 21746128
Alignment:
Q  24 tctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaa 77  Q
    |||| ||||||||||||| ||| |||||||||||||| |||||| | |||||||    
T  21746181 tctcatcttctctcttccaaatatatgaggtgtacaagggtgtatgtaaataaa 21746128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 33118837 - 33118784
Alignment:
Q  30 cttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||| |||| || ||| ||||||||| |||||| |||||||||||||||    
T  33118837 cttctctctccctagtgcatggggtgtacaagggtgtatggaaataaagggtgt 33118784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 42710292 - 42710221
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgta 90  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| || |||||||||||| ||||||    
T  42710292 ttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaagggtgtctgtgta 42710221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 43414579 - 43414504
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| || |||||||||||| | ||||||||    
T  43414579 ttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatggcaataaagggtgtctatgtaacat 43414504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 34012294 - 34012230
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| ||||||||  ||||||||||||    
T  34012294 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggtgt 34012230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 14548024 - 14548088
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| | |||| || ||||||||||||    
T  14548024 ttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgt 14548088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 37038580 - 37038656
Alignment:
Q  18 attttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||| ||||||||||||||||||||| || ||| ||||||||| ||||||  |||||||||||||| | ||||||||    
T  37038580 atttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacat 37038656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 40423941 - 40423877
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||||| || |||||| |||||    
T  40423941 ttttctctcctcttctctcttcctaatacatgaggtgtacaagggtgtatgggaataaaaggtgt 40423877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 5957936 - 5958007
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||||| || ||||||||||||| |||||| |  |||||||||||| | ||||||||    
T  5957936 ctctcctcttctctcttcctagtgcatgaggtgtacaagggtgtatgagaataaagggtgtttatgtaacat 5958007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 504119 - 504055
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| |||||| |  ||||||||||||    
T  504119 ttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgt 504055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 12831149 - 12831197
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  12831149 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgta 12831197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 15048179 - 15048115
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||| ||||||||||||||||||||||||||| | ||||||| ||||||  | ||||||||||||    
T  15048179 ttttatctcctcttctctcttcctaatgtatgggatgtacaagggtgtatcggaataaagggtgt 15048115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 23122595 - 23122531
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| |||||| |  ||||||||||||    
T  23122595 ttttctctcctgttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgt 23122531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 9122287 - 9122346
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaag 78  Q
    |||||||||||||||||||||||||||| ||| |||||||||  ||||| || |||||||    
T  9122287 ttttctctcctcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaag 9122346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 15197435 - 15197493
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaa 77  Q
    |||||||||||||| |||||||| |||| ||||||||||||| |||||| || ||||||    
T  15197435 ttttctctcctcttttctcttccaaatgcatgaggtgtacaagggtgtatgggaataaa 15197493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 1179938 - 1179897
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaa 60  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  1179938 ttttctctcctcttctctcttcctaatgcatggggtgtacaa 1179897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 44507085 - 44507037
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| ||||||    
T  44507085 ttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgta 44507037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 4854861 - 4854786
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||||| |||||||||| | ||||||| ||| || |  ||||||| |||| | ||||||||    
T  4854861 ttttctctcctcttctctcttactaatgtatgggatgtacaagggtatatgagaataaagagtgtctatgtaacat 4854786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 15258923 - 15258852
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||||||   |||  | |||||||| ||||| ||||||||||||||| | ||||||||    
T  15258923 ctctcctcttctctcttcctagaatataggatgtacaaaagtgtatggaaataaagggtgtctatgtaacat 15258852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 30479463 - 30479397
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||  ||||||||||||| |||||| | || |||| ||||| | ||||||||    
T  30479463 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacat 30479397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 32032835 - 32032901
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||  ||||||||||||| |||||| | || |||| ||||| | ||||||||    
T  32032835 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacat 32032901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 34307327 - 34307393
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||| |||| ||||||||| |||||| | || |||| ||||| | ||||||||    
T  34307327 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacat 34307393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 25838291 - 25838351
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagg 79  Q
    |||||||||||||||||| || |||||||||  ||||||||| | |||| || ||||||||    
T  25838291 ttttctctcctcttctcttttgctaatgtatagggtgtacaaggttgtatggcaataaagg 25838351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 31110759 - 31110684
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| | ||||||||    
T  31110759 ttttctctactcttctctcttcctaatgtatggggtgtacaaaggtgtatggaaataaaggatgtctatgtaacat 31110684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 17598656 - 17598720
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||||| ||||||||| |||||    
T  17598656 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaaggtgt 17598720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 31976350 - 31976425
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| |  |||||| ||||| | ||||||||    
T  31976350 ttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacat 31976425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 11427720 - 11427784
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||||| |  ||||||||||||    
T  11427720 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgt 11427784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 32869780 - 32869844
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| | |||| || ||||||||||||    
T  32869780 ttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgt 32869844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 22880656 - 22880585
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgta 90  Q
    |||||||||||||||||||||||||||  ||| ||||||||| |||||| || |||||| ||||||| ||||    
T  22880656 ttttctctcctcttctctcttcctaatacatggggtgtacaagggtgtatgggaataaatggtgtatatgta 22880585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 29857929 - 29857993
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||| ||||||||||||||||||| ||| ||||||||| |||||| || |||||| |||||    
T  29857929 ttttctcttctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtgt 29857993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 6209463 - 6209402
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggt 81  Q
    |||||||||||||||||||||||||||| ||| | ||||||||| |||| || ||||||||||    
T  6209463 ttttctctcctcttctctcttcctaatgcatgggatgtacaaagatgta-gggaataaagggt 6209402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 23128125 - 23128067
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaa 77  Q
    |||||||||||||| ||||||||||||| ||| | ||||||| |||||| |||||||||    
T  23128125 ttttctctcctcttttctcttcctaatgcatgggatgtacaagggtgtatggaaataaa 23128067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 946478 - 946519
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaa 60  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  946478 ttttctctcctcttctctcttcctaatgcatgagatgtacaa 946519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 15832679 - 15832743
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||| ||||||||||| ||||||||||| ||| ||||||||| ||||||  | ||||||||||||    
T  15832679 ttttttctcctcttctatcttcctaatgcatggggtgtacaagggtgtattggaataaagggtgt 15832743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 30870120 - 30870180
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||||||||||| ||| | |||  |||||||||||||||| | |||||||||||||    
T  30870120 ctctcctcttctctctttctagtatatagggtgtacaaaggtgtatgaaaataaagggtgt 30870180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 15990031 - 15989965
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||| |||| ||||||||| |||||| | || |||| ||||| | ||||||||    
T  15990031 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacat 15989965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 30341349 - 30341283
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||| |||| ||||||||| |||||| | || |||| ||||| | ||||||||    
T  30341349 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacat 30341283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 36732940 - 36732876
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||    
T  36732940 ttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgt 36732876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 15409608 - 15409533
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| |  |||||||||||| | ||||||||    
T  15409608 ttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgcgaataaagggtgtttatgtaacat 15409533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 18520882 - 18520818
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |||||| | |||||||||||||    
T  18520882 ttttatctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgt 18520818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 33149636 - 33149572
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| ||||||||  ||||||||||||    
T  33149636 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggtgt 33149572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 35785301 - 35785365
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| |||||| ||||||||| |||||    
T  35785301 ttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaaggtgt 35785365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 2740376 - 2740440
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||| ||||||||||||||||| ||| | ||||||| |||||| || ||||||||||||    
T  2740376 ttttctctccccttctctcttcctaatgcatgggatgtacaagggtgtatgggaataaagggtgt 2740440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 6679800 - 6679848
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  6679800 ttttctctcctcttctctcttcctaatgtatagggtgtacaagggtgta 6679848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 14831916 - 14831980
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||| ||||||||||||||||||||||| ||| ||||||||| | |||| || ||||||||||||    
T  14831916 ttttttctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgt 14831980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 31009089 - 31009165
Alignment:
Q  18 attttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||| |||| |||||||||||||||| || ||| |||||||||||||||| |  |||||||||||| | ||||||||    
T  31009089 atttcctcttctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtctatgtaacat 31009165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 40145509 - 40145573
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| | ||||||||||| ||| || |  ||||||||||||    
T  40145509 ttttctctcctcttctctcttcctaatgcacgaggtgtacaagggtatatgagaataaagggtgt 40145573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 26720618 - 26720666
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||| ||||||||||||||||||||||| ||||||| | ||||||    
T  26720618 ttttctcttctcttctctcttcctaatgtatggggtgtactagggtgta 26720666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 26990367 - 26990415
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||| ||||||||||||||||||||||| ||||||| | ||||||    
T  26990367 ttttctcttctcttctctcttcctaatgtatggggtgtactagggtgta 26990415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 31132448 - 31132500
Alignment:
Q  31 ttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||| |||||| ||||||||||||| |||||| | |||||||||||||    
T  31132448 ttctctctttctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgt 31132500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 21370110 - 21370181
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||| |||||| |||||||| | ||| || |||||||||||||| | ||||||||||||| | ||||||||    
T  21370110 ctctcatcttctttcttcctagtatataagatgtacaaaggtgtatgaaaataaagggtgtttatgtaacat 21370181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 2252157 - 2252091
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||| |||| ||||||||| |||||| | || |||| ||||| | ||||||||    
T  2252157 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacat 2252091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 3921254 - 3921188
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||| |||| ||||||||| |||||| | || |||| ||||| | ||||||||    
T  3921254 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacat 3921188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 13811757 - 13811818
Alignment:
Q  22 tctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||||||||||||||||||| ||| | ||||||| | |||| || |||||| |||||    
T  13811757 tctctcctcttctctcttcctaatgcatgggatgtacaaggatgtatgggaataaatggtgt 13811818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 28177877 - 28177914
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgt 56  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  28177877 ttttctctcctcttccctcttcctaatgtatggggtgt 28177914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 39557515 - 39557475
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtaca 59  Q
    |||| ||||||||||||||||||||||  ||||||||||||    
T  39557515 ttttatctcctcttctctcttcctaatacatgaggtgtaca 39557475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 17473122 - 17473186
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||    
T  17473122 ttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgt 17473186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 19930818 - 19930754
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| || |||||| |||||    
T  19930818 ttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaaaggtgt 19930754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 28863557 - 28863621
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||    
T  28863557 ttttatctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgt 28863621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 2533225 - 2533300
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||| |||||||||||||||||| |||||||| ||||||||| |||||| || |||||||||||||| | ||||||    
T  2533225 ttttatctcctcttctctcttcccaatgtatggggtgtacaagggtgtatgggaataaagggtgtatatataacat 2533300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 7465733 - 7465669
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||| |||| |||||||||||||||||| ||||||||||||| |||||| || ||||||||||||    
T  7465733 ttttatctcttcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgt 7465669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 13438445 - 13438509
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| | |||| || ||||||||||||    
T  13438445 ttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgt 13438509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 42257295 - 42257359
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||| ||||||||||||||| |||||||||  |||||  ||||||||||||||    
T  42257295 ttttctctcctcttctttcttcctaatgtatggggtgtacaagagtgtatagaaataaagggtgt 42257359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 20700921 - 20700992
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||||| || ||| ||||||||| |||||| || |||||||||||| | ||||||||    
T  20700921 ctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtaacat 20700992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 36168938 - 36169013
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||| |||||||||||||||||||| |||||||||  ||||| |  |||||||||||| | ||||||||    
T  36168938 ttttctctcctattctctcttcctaatgtatggggtgtacaagagtgtatgagaataaagggtgtttatgtaacat 36169013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 40613900 - 40613825
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||| |||| ||||| ||||||||| ||||||||| |||||| || |||||||||||| | ||||||||    
T  40613900 ttttctctcctattctttcttcataatgtatggggtgtacaagggtgtatgggaataaagggtgtctatgtaacat 40613825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 4060787 - 4060845
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaa 77  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| |||||| |||||||||    
T  4060787 ttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaa 4060845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 9058582 - 9058644
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggt 81  Q
    |||||||||||||||||||||||||||| ||| |||||||||  ||||| || ||||||||||    
T  9058582 ttttctctcctcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaagggt 9058644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 10249380 - 10249316
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||| ||||||||||||| ||| ||||||||| |||||| |  ||||||||||||    
T  10249380 ttttctctcctcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgt 10249316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 28381653 - 28381589
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| | |||| || ||||||||||||    
T  28381653 ttttctctcatcttctctcttcctaatatatggggtgtacaaggatgtatgggaataaagggtgt 28381589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 40701580 - 40701644
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||| |||||||||||||||||| ||  ||||||||| |||||| ||||||||| |||||    
T  40701580 ttttctctcatcttctctcttcctaatgcatcgggtgtacaagggtgtatggaaataaaaggtgt 40701644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 3440085 - 3440156
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||| |||   |||  |||||||||||||||| ||||||||||||||| | ||||||||    
T  3440085 ctctcctcttctctctttctagaatatagggtgtacaaaggtgtatggaaataaagggtgtctatgtaacat 3440156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 17819997 - 17819960
Alignment:
Q  24 tctcctcttctctcttcctaatgtatgaggtgtacaaa 61  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17819997 tctcctcttctctcttcctaatgcatgaggtgtacaaa 17819960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 30915565 - 30915622
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataa 76  Q
    ||||||||| |||||||||||||||||  ||| ||||||||| |||||| ||||||||    
T  30915565 ttttctctcatcttctctcttcctaatacatggggtgtacaagggtgtatggaaataa 30915622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 32505647 - 32505598
Alignment:
Q  18 attttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||| ||||||    
T  32505647 attttctctcctcttctctcttcttaatgcatggggtgtacaagggtgta 32505598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 38273140 - 38273099
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaa 60  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  38273140 ttttctctcctattctctcttcctaatgtatggggtgtacaa 38273099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 33436094 - 33436050
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||||    
T  33436094 ctctcatcttctctcttcctaatgcatgaggtgtacaagggtgta 33436050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 3034972 - 3034906
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||  ||||||||||| |||||||| | || |||| ||||| | ||||||||    
T  3034972 ctcttctctcttcctaatacatgaggtgtaccaaggtgtatgcaattaaaaggtgtctatgtaacat 3034906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 17823895 - 17823965
Alignment:
Q  24 tctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||| ||||||||||||| ||| |||| ||||||||| |||||| | ||||||||| ||| | ||||||||    
T  17823895 tctcatcttctctcttccaaatatatggggtgtacaagggtgtatgtaaataaaggatgtctatgtaacat 17823965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 44152034 - 44152104
Alignment:
Q  24 tctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||||||| ||||| | ||||| |||||| |  |||||| ||||| | ||||||||    
T  44152034 tctcctcttctctcttcctaatgcatgagatatacaagggtgtatgcgaataaaaggtgtttatgtaacat 44152104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 41758689 - 41758730
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaa 60  Q
    |||| |||||||||||||||||||||| |||| |||||||||    
T  41758689 ttttatctcctcttctctcttcctaatatatggggtgtacaa 41758730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 21301498 - 21301434
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||| ||| ||||||| |||||||| || ||||||||||||   ||||| |||||||||||||||    
T  21301498 ttttatcttctcttctttcttcctagtgcatgaggtgtacatgagtgtatggaaataaagggtgt 21301434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 480445 - 480382
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtg 82  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||||    
T  480445 ttttctctcctcttctctcttcctaatgcatggggtgtacaaaggtgtatggaaataatgggtg 480382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 41236449 - 41236513
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||||| || ||||||||||||    
T  41236449 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgt 41236513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 42044365 - 42044301
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| | ||||||| |||||| |||||||||||||||    
T  42044365 ttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataaagggtgt 42044301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 41823984 - 41824059
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||| |  |||||| ||||| | ||||||||    
T  41823984 ttttctctcttcttctctcttcctaatgcatgaggtgtacaaaggtgtatgagaataaatggtgtctatgtaacat 41824059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 50052422 - 50052351
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||| | ||||||||    
T  50052422 ctctcctcttctctcttcctagtgcataaggtgtacaaaggtgtatgggaataaagggtgtctatgtaacat 50052351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 24995105 - 24995041
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||| ||||| ||| ||||||||| |||||| || ||||||||||||    
T  24995105 ttttctctcctcttctctcttcttaatgcatggggtgtacaatggtgtatgggaataaagggtgt 24995041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 50526170 - 50526094
Alignment:
Q  18 attttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||| ||||||||||||||||||||| || ||| ||||||||| ||||||  |||||||||||||| | ||||||||    
T  50526170 atttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacat 50526094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 11511460 - 11511402
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaa 77  Q
    |||||||| ||||||||||||| ||||| ||||||||||||| |||||| |||||||||    
T  11511460 ttttctcttctcttctctcttcttaatgcatgaggtgtacaagggtgtatggaaataaa 11511402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 6034146 - 6034194
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  6034146 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgta 6034194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 40574881 - 40574929
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    ||||||||||||||||||||||||||| |||| ||||||||| ||||||    
T  40574881 ttttctctcctcttctctcttcctaatatatggggtgtacaagggtgta 40574929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 48183047 - 48182983
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||| ||||| ||| ||||||||| |||||| |  ||||||||||||    
T  48183047 ttttctctcctcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaagggtgt 48182983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 54473531 - 54473467
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||  |||  |||||||| |||||| || ||||||||||||    
T  54473531 ttttctctcctcttctctcttcctaatacatggagtgtacaagggtgtatgggaataaagggtgt 54473467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 29239992 - 29240063
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||||| || ||| |||||||||  ||||| || |||||||||||| | ||||||||    
T  29239992 ctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtctatgtaacat 29240063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 31910294 - 31910369
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||| |||||||||||||||||||||| | |||||||  ||||| || |||||| ||||| | ||||||||    
T  31910294 ttttctctcatcttctctcttcctaatgtatgggatgtacaagagtgtatgggaataaatggtgtctatgtaacat 31910369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 23608337 - 23608377
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtaca 59  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  23608337 ttttatctcctcttctctcttcctaatgcatgaggtgtaca 23608377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 29234243 - 29234205
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgta 57  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  29234243 ttttctctcctcttctctcttcctaatgcatggggtgta 29234205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 56300159 - 56300122
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaa 60  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  56300159 ctctcctcttctctctttctaatgtatgagatgtacaa 56300122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 32813349 - 32813424
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| || |||||| ||||| | ||||||||    
T  32813349 ttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacat 32813424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 27564733 - 27564669
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||||| || ||||||||||||    
T  27564733 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgt 27564669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 37649300 - 37649364
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||||| || ||||||||||||    
T  37649300 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgt 37649364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 38632319 - 38632255
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||||| || ||||||||||||    
T  38632319 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgt 38632255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 49811525 - 49811450
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||||||||||||||||| |||| |||| |||||| |  |||||||||||| | ||||||||    
T  49811525 ttttctctcctcttctctcttcctaatgtatgtggtgcacaagggtgtatgagaataaagggtgtctatgtaacat 49811450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 41758907 - 41758971
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||||| |  ||||||||||||    
T  41758907 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgt 41758971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 48716280 - 48716216
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||| ||||||||||||||||||||| ||| ||||||||| |||||| || ||||||||||||    
T  48716280 ttttctttcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgt 48716216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 51898682 - 51898606
Alignment:
Q  18 attttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||| ||||||||||||||||||||| || ||| ||||||||| ||||||  |||||||||||||| | ||||||||    
T  51898682 atttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacat 51898606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 3000421 - 3000478
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataa 76  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| |||||| ||||||||    
T  3000421 ttttctctcatcttctctcttcctaatatatggggtgtacaagggtgtatggaaataa 3000478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 38595256 - 38595313
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataa 76  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| |||||| ||||||||    
T  38595256 ttttctctcatcttctctcttcctaatatatggggtgtacaagggtgtatggaaataa 38595313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 2582017 - 2582065
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  2582017 ttttctctcctcttctctcttcctaatacatgaggtgtacaagggtgta 2582065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 45044558 - 45044510
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  45044558 ttttctcttctcttctctcttcctaatgtatggggtgtacaagggtgta 45044510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 37926436 - 37926395
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaa 60  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  37926436 ttttctcttctcttctctcttcctaatgtatggggtgtacaa 37926395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 9474874 - 9474826
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||||||||||||||||||||||| ||| | ||||||| ||||||    
T  9474874 ttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgta 9474826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 47452318 - 47452254
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||||||||||||||||||| || ||| ||||||||| | |||| || ||||||| ||||    
T  47452318 ttttctctcctcttctctcttcctattgcatggggtgtacaaggatgtatgggaataaagagtgt 47452254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 50630560 - 50630608
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||||||||||||||||||||||| ||  ||||||||| ||||||    
T  50630560 ttttctctcctcttctctcttcctaatgcatagggtgtacaagggtgta 50630608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 26274540 - 26274595
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||||||||||||| ||||| || |||| |||||| || ||||||||||||    
T  26274540 ctcttctctcttcctaatgcatgagatgcacaagggtgtatgggaataaagggtgt 26274595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 6260977 - 6261047
Alignment:
Q  24 tctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||| ||| | |||  |||||||||||||||| | ||||||| ||||| | ||||||||    
T  6260977 tctcctcttctctctttctagtatatagggtgtacaaaggtgtatgaaaataaatggtgtgtatgtaacat 6261047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 19329944 - 19330008
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||||| || ||||||||||||    
T  19329944 ttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgt 19330008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 26296746 - 26296802
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaata 75  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  26296746 ttttctctcctcttctctcttcttaatgtatgaggtgtacaagggtgtatggaaata 26296802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 38837319 - 38837383
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||| | ||||||| |||||| |||||||||||||||    
T  38837319 ttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataaagggtgt 38837383  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 35522978 - 35523053
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |||||| || |||||| ||||| | ||||||||    
T  35522978 ttttctctcttcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtttatgtaacat 35523053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 31735979 - 31736037
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaa 77  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| || ||||||    
T  31735979 ttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaa 31736037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 8080381 - 8080317
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||||||||||||||||||| || ||| ||||||||| |||||| || ||||||||||||    
T  8080381 ttttctctcctcttctctcttcctattgcatggggtgtacaagggtgtatgggaataaagggtgt 8080317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 11044284 - 11044344
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| | |||||||| ||||    
T  11044284 ctctcatcttctctcttcctaatgcatgaggtgtacaaaggtgtatgaaaataaagagtgt 11044344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 46033799 - 46033724
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||| |||||| |  |||||| ||||| | ||||||||    
T  46033799 ttttctctcctcttctctattcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacat 46033724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 38267142 - 38267200
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaa 77  Q
    |||||||||||||||||||||||||||| ||| | ||||| |||||||| |||||||||    
T  38267142 ttttctctcctcttctctcttcctaatgcatgggatgtacgaaggtgtatggaaataaa 38267200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 41423789 - 41423859
Alignment:
Q  24 tctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||||| || ||| |||||||||||||||| |  |||||||||||| | ||||||||    
T  41423789 tctcctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtttatgtaacat 41423859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 12311013 - 12311081
Alignment:
Q  26 tcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||| | ||  || |||||||||||||| ||||||||||||||| | ||||||||    
T  12311013 tcctcttctctcttcctagtatacaagatgtacaaaggtgtatggaaataaagggtgtctatgtaacat 12311081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 40957809 - 40957873
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| |||||| | |||||| ||||||    
T  40957809 ttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatgaaaataatgggtgt 40957873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 16374810 - 16374747
Alignment:
Q  31 ttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||||  ||||||||||||||| |  |||||||||||| | ||||||||    
T  16374810 ttctctcttcctaatgtatggagtgtacaaaggtgtatgagaataaagggtgtctatgtaacat 16374747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 3784097 - 3784138
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaa 60  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  3784097 ttttctctcctcttctctcttcctaatgcatggggtgtacaa 3784138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 4999512 - 4999464
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||| ||||||||||||||||||||||| ||| ||||||||| ||||||    
T  4999512 ttttatctcctcttctctcttcctaatgcatggggtgtacaagggtgta 4999464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 32951491 - 32951443
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||||||||||||||||||||||  ||| ||||||||| ||||||    
T  32951491 ttttctctcctcttctctcttcctaatacatggggtgtacaagggtgta 32951443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 35137635 - 35137683
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||||||||||||||||||||||| ||| | ||||||| ||||||    
T  35137635 ttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgta 35137683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 46374807 - 46374747
Alignment:
Q  34 tctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||| ||||||||| |||||| || |||||| ||||| | ||||||||    
T  46374807 tctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacat 46374747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 21234507 - 21234578
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||| | |||||||||||||||||| ||||||||| |||||| |  |||||| ||||| | ||||||||    
T  21234507 ctctcctttcctctcttcctaatgtatggggtgtacaatggtgtatgagaataaaaggtgtctatgtaacat 21234578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 3694469 - 3694523
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaa 73  Q
    ||||||||||||||||||||||| |||| ||| |||||||||  ||||| |||||    
T  3694469 ttttctctcctcttctctcttcccaatgcatggggtgtacaagagtgtatggaaa 3694523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 22343472 - 22343538
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||  ||||||||||||| |||||| | || |||| ||||| | ||||||||    
T  22343472 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacat 22343538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 41915852 - 41915918
Alignment:
Q  28 ctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||| |||| ||||||||| |||||| | || |||| ||||| | ||||||||    
T  41915852 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacat 41915918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 3434666 - 3434718
Alignment:
Q  31 ttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||| ||| ||||||||| | |||| || ||||||||||||    
T  3434666 ttctctcttcctaatgcatggggtgtacaaggctgtatgggaataaagggtgt 3434718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 19436185 - 19436137
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgta 67  Q
    |||||||| ||||| ||||||||||||| ||| ||||||||| ||||||    
T  19436185 ttttctcttctcttttctcttcctaatgcatggggtgtacaagggtgta 19436137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 17209 - 17280
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    |||||||||||||||||||||   ||| ||||||||||||||||| ||||||||||||||| | ||||||||    
T  17209 ctctcctcttctctcttcctagaatataaggtgtacaaaggtgtatggaaataaagggtgtctatgtaacat 17280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 10107 - 10043
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||||||||||||||||||||||| ||  ||||||||| |||||| |||||||| ||||||    
T  10107 ttttctctcctcttctctcttcctaatgcatagggtgtacaagggtgtatggaaataatgggtgt 10043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 4131 - 4195
Alignment:
Q  19 ttttctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgt 83  Q
    |||||||| ||||||||||||||||||| ||| ||||||||| |||||| || |||||| |||||    
T  4131 ttttctcttctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtgt 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 923 - 852
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||||| || ||| |||||||||  ||||| || |||||||||||| | ||||||||    
T  923 ctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtttatgtaacat 852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 923 - 852
Alignment:
Q  23 ctctcctcttctctcttcctaatgtatgaggtgtacaaaggtgtacggaaataaagggtgtatgtgtaacat 94  Q
    ||||||||||||||||||||| || ||| |||||||||  ||||| || |||||||||||| | ||||||||    
T  923 ctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtttatgtaacat 852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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