View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_low_23 (Length: 331)
Name: NF17474_low_23
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 31722050 - 31721749
Alignment:
| Q |
15 |
gaagaagatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattg |
114 |
Q |
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|||||||||||| |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31722050 |
gaagaagatgcaaatcataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattg |
31721951 |
T |
|
| Q |
115 |
ttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31721950 |
ttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgga |
31721851 |
T |
|
| Q |
215 |
ttccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcatcaca |
314 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31721850 |
ttccaaaggctcgtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcaca |
31721751 |
T |
|
| Q |
315 |
tg |
316 |
Q |
| |
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|| |
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| T |
31721750 |
tg |
31721749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 31711344 - 31711043
Alignment:
| Q |
15 |
gaagaagatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattg |
114 |
Q |
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|||||||||||| |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711344 |
gaagaagatgcaaatcataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattg |
31711245 |
T |
|
| Q |
115 |
ttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
31711244 |
ttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggcctttaatactgataacaagtttggtatgaaacgga |
31711145 |
T |
|
| Q |
215 |
ttccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcatcaca |
314 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
31711144 |
ttccaaaggctcgtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggtggcttcaca |
31711045 |
T |
|
| Q |
315 |
tg |
316 |
Q |
| |
|
|| |
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|
| T |
31711044 |
tg |
31711043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 31719444 - 31719150
Alignment:
| Q |
16 |
aagaagatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgt |
115 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719444 |
aagaagatgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgt |
31719345 |
T |
|
| Q |
116 |
tgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719344 |
tgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggat |
31719245 |
T |
|
| Q |
216 |
tccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcatcacat |
315 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
31719244 |
tccaaaggctcgtcaagtgt------ctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagaccttggtggcttcacat |
31719151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 31716499 - 31716217
Alignment:
| Q |
15 |
gaagaagatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| | |
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| T |
31716499 |
gaagaagatgcagatcatacggatgagaagtccacgtagggattggaagatcagaacaagtccaaagctaagatggatgataagat-------------g |
31716413 |
T |
|
| Q |
115 |
ttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgga |
214 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||| |
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|
| T |
31716412 |
gtgacaaaaatcaagaatacttatatgaactttatgctgaagttggctggtaatgtaggaggggcattgaacactgataacaagtttggtgtgaaaagga |
31716313 |
T |
|
| Q |
215 |
ttccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcatcaca |
314 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| || |||||||| ||||| |
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| T |
31716312 |
ttccaaaggctcgtcaagt------atctaaaggttattctggtgatgcattcgaggctaggcttattttttagatttctaaaactttggttgcttcaca |
31716219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 31730169 - 31730228
Alignment:
| Q |
249 |
ttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgc |
308 |
Q |
| |
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||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
31730169 |
ttattctcgtgatgcttttgaggctagacttatatttgagatttctaaggccttggttgc |
31730228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 31725929 - 31726041
Alignment:
| Q |
40 |
agaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatacgtata |
139 |
Q |
| |
|
||||| ||||||||| ||||| ||| | ||||| ||||| ||| |||||| |||| | ||||||||||||| |||||||||| | ||||| |||| |
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| T |
31725929 |
agaagcccacgtaagttttggaggatcaaaacaatcccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaagggttata |
31726028 |
T |
|
| Q |
140 |
tgaactttatgtt |
152 |
Q |
| |
|
||||||||||||| |
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|
| T |
31726029 |
tgaactttatgtt |
31726041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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