View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17474_low_25 (Length: 313)

Name: NF17474_low_25
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17474_low_25
NF17474_low_25
[»] chr2 (5 HSPs)
chr2 (54-259)||(30934592-30934796)
chr2 (169-263)||(40070659-40070754)
chr2 (196-263)||(28574780-28574847)
chr2 (9-52)||(30934833-30934876)
chr2 (194-263)||(6661146-6661215)
[»] chr1 (5 HSPs)
chr1 (54-178)||(22590277-22590401)
chr1 (203-263)||(22590390-22590450)
chr1 (9-52)||(22590197-22590240)
chr1 (193-263)||(9469464-9469534)
chr1 (168-213)||(19722163-19722208)
[»] chr8 (2 HSPs)
chr8 (167-263)||(28952143-28952240)
chr8 (166-213)||(15739807-15739854)
[»] chr5 (8 HSPs)
chr5 (180-263)||(22129032-22129115)
chr5 (182-263)||(23737555-23737636)
chr5 (180-263)||(5023608-5023691)
chr5 (169-230)||(19906390-19906451)
chr5 (219-263)||(19209487-19209531)
chr5 (205-263)||(34369717-34369775)
chr5 (196-263)||(34607343-34607410)
chr5 (180-213)||(34369778-34369811)
[»] chr7 (1 HSPs)
chr7 (180-263)||(22691023-22691106)
[»] chr4 (4 HSPs)
chr4 (180-263)||(7622191-7622274)
chr4 (169-263)||(34742412-34742506)
chr4 (166-263)||(10802652-10802749)
chr4 (194-263)||(3794026-3794095)
[»] chr6 (2 HSPs)
chr6 (189-262)||(19830981-19831054)
chr6 (264-296)||(8634566-8634598)
[»] chr3 (1 HSPs)
chr3 (169-263)||(21530223-21530317)
[»] scaffold0179 (2 HSPs)
scaffold0179 (173-240)||(23800-23867)
scaffold0179 (173-263)||(11225-11315)
[»] scaffold0029 (1 HSPs)
scaffold0029 (166-213)||(60481-60528)
[»] scaffold0014 (1 HSPs)
scaffold0014 (166-214)||(17943-17991)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 54 - 259
Target Start/End: Complemental strand, 30934796 - 30934592
Alignment:
Q  54 aagaatgtgtggtgttttgttnnnnnnntaaaataaaggggaaataataagccaggggctgcttgcaatttgcgaggggcacacccctgtttttgctaaa 153  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30934796 aagaatgtgtggtgttttgttaaaaaaataaaataaaggggaaataataagccaggggctgcttgcaatttgcgaggggcacacccctgtttttgctaaa 30934697  T
Q  154 agcgttccatttcaatttgccaggggtttccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaaca 253  Q
    |||||||||||||||||||||| ||||||||||  |||| ||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  30934696 agcgttccatttcaatttgcca-gggtttccctcgcataactcctggtaaatttgctaggagttcttgctcctggcattattccctggcaatatgcaaca 30934598  T
Q  254 tttctt 259  Q
    ||||||    
T  30934597 tttctt 30934592  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 40070659 - 40070754
Alignment:
Q  169 tttgccaggggtttccc-tgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    ||||||||| ||||||| || ||||||| ||| | ||||| |||||  ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40070659 tttgccaggagtttcccctgacatagcttctgccgaattttccaggagttcttgctcctggcattattccctggccatatgcaacatttcttgtag 40070754  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 28574847 - 28574780
Alignment:
Q  196 cctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    ||||||||||||||||||  ||||||||||| |||||||| | || ||||||||||||||||||||||    
T  28574847 cctggcaaatttgccaggagttcttgctcctagcattatttcatgacaatatgcaacatttcttgtag 28574780  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 30934876 - 30934833
Alignment:
Q  9 gagaagaagaagagaagcgtacgatgctgttgttttggagagag 52  Q
    |||||||||| |||||| ||||||||||||||||||||||||||    
T  30934876 gagaagaagatgagaagtgtacgatgctgttgttttggagagag 30934833  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 6661146 - 6661215
Alignment:
Q  194 ctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||||||||| |||||| ||| |||||||||||| |||||||||| |  ||||  |||||||||||    
T  6661146 ctcctggcaaatttcccaggggttcatgctcctggcataattccctggctaattgcaggatttcttgtag 6661215  T

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Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 22590277 - 22590401
Alignment:
Q  54 aagaatgtgtggtgttttgttnnnnnnntaaaataaaggggaaataataagccaggggctgcttgcaatttgcgaggggcacacccctgtttttgctaaa 153  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22590277 aagaatgtgtggtgttttgttaaaaaaataaaataaaggggaaataataagccaggggctgcttgcaatttgcgaggggcacacccctgtttttgctaaa 22590376  T
Q  154 agcgttccatttcaatttgccaggg 178  Q
    |||||||||||||||||||||||||    
T  22590377 agcgttccatttcaatttgccaggg 22590401  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 22590390 - 22590450
Alignment:
Q  203 aatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  22590390 aatttgccagggattcttgctcctggcattatttcctggcaatatgcaatatttcttgtag 22590450  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 22590197 - 22590240
Alignment:
Q  9 gagaagaagaagagaagcgtacgatgctgttgttttggagagag 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22590197 gagaagaagaagagaagcgtacgatgctgttgttttggagagag 22590240  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 9469534 - 9469464
Alignment:
Q  193 gctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||||||||||||||||  ||| ||||||| |||| ||||| ||| || ||||||||||||||||||    
T  9469534 gctcctggcaaatttgccaggagttcatgctcctagcataattccgtggtaaaatgcaacatttcttgtag 9469464  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 19722163 - 19722208
Alignment:
Q  168 atttgccaggggtttccctgccatagctcctggcaaatttgccagg 213  Q
    |||||||||||||||||||| |||  ||||||| ||||||||||||    
T  19722163 atttgccaggggtttccctggcattactcctggtaaatttgccagg 19722208  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 28952240 - 28952143
Alignment:
Q  167 aatttgccaggggttt-ccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    ||||||||||| |||| ||||| ||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  28952240 aatttgccaggagttttccctggcatggctcctggcaaatttgccaggagttcttgctcctggcattattccctggcaatatacaagatttcttgtag 28952143  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 15739854 - 15739807
Alignment:
Q  166 caatttgccaggggtttccctgccatagctcctggcaaatttgccagg 213  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||    
T  15739854 caatttgccaggggtttccctggcattactcctggcaaatttgccagg 15739807  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 22129032 - 22129115
Alignment:
Q  180 tttccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||| ||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  22129032 tttccctggcatggctcctggcaaatttgccaggagttcttgctcctggcattattccctggcaatatacaagatttcttgtag 22129115  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 23737636 - 23737555
Alignment:
Q  182 tccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||| ||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  23737636 tccctggcattgctcctggcaaatttgccaggagttcttgctcctggcattgttccctggcaatatgcaagatttcttgtag 23737555  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 5023608 - 5023691
Alignment:
Q  180 tttccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||| ||| ||||||||||||||| |||||  ||||||||| ||||||||||||||| |||||| ||| |||||||||||    
T  5023608 tttccctggcatggctcctggcaaattttccaggagttcttgctcttggcattattccctgacaatatacaagatttcttgtag 5023691  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 19906451 - 19906390
Alignment:
Q  169 tttgccaggggtttccctgccatagctcctggcaaatttgccagggattcttgctcctggca 230  Q
    |||||||||||  |||||| ||| |||||||||||||||||||||  |||||||||||||||    
T  19906451 tttgccaggggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctggca 19906390  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 19209487 - 19209531
Alignment:
Q  219 ttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||||||||| |||||||||||||||||| |||||||||||    
T  19209487 ttgctcctggcattgttccctggcaatatgcaagatttcttgtag 19209531  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 34369775 - 34369717
Alignment:
Q  205 tttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||||  ||||||||||||||||| ||||||| |||||| ||| |||||||||||    
T  34369775 tttgccaggagttcttgctcctggcattgttccctgacaatatacaagatttcttgtag 34369717  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 34607410 - 34607343
Alignment:
Q  196 cctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    ||||||||||||||| ||  || |||||||||||||| |||||| ||||||  ||| |||||||||||    
T  34607410 cctggcaaatttgcctggagtttttgctcctggcatttttccctagcaatacacaagatttcttgtag 34607343  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 34369811 - 34369778
Alignment:
Q  180 tttccctgccatagctcctggcaaatttgccagg 213  Q
    |||||||| |||||||||||||||||||||||||    
T  34369811 tttccctggcatagctcctggcaaatttgccagg 34369778  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 22691023 - 22691106
Alignment:
Q  180 tttccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||| ||| |||||||||||| ||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22691023 tttctctggcatagctcctggaaaatttgacagcagttcttgctcctggcattattccctggcaatatgcaacatttcttgtag 22691106  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 7622274 - 7622191
Alignment:
Q  180 tttccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||| |||||||||||||||||||||||||  || |||||||||||||| |||||||||||||  ||| |||||||||||    
T  7622274 tttccctggcatagctcctggcaaatttgccaggagtttttgctcctggcatttttccctggcaatacacaagatttcttgtag 7622191  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 34742506 - 34742412
Alignment:
Q  169 tttgccaggggtttccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||||||||||| || |||||  ||||||||||||||||||| ||  |||||||||||| ||| |||||||| |||||  |||||||||||    
T  34742506 tttgccaggggtttccttggcatagtccctggcaaatttgccaggggttgatgctcctggcataatttcctggcaaaatgcaggatttcttgtag 34742412  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 10802652 - 10802749
Alignment:
Q  166 caatttgccaggggtttccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||||||| || |||||| |||  |||||| |||||||||||||   |  |||||| | |||||||||||||||| | ||||| ||||||||||    
T  10802652 caatttgccaggagtgtccctggcattactcctgacaaatttgccaggagctgatgctcccgacattattccctggcaaaacgcaacttttcttgtag 10802749  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 3794095 - 3794026
Alignment:
Q  194 ctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||||||||| |||||| ||| |||||||||||| ||||||| || |  ||||  |||||||||||    
T  3794095 ctcctggcaaattttccaggggttcatgctcctggcataattccctagctaattgcaggatttcttgtag 3794026  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 19830981 - 19831054
Alignment:
Q  189 catagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgta 262  Q
    ||||||||||||||||||| |||||  ||||||||||||||||| ||||||||||||||| || ||||||||||    
T  19830981 catagctcctggcaaattttccaggagttcttgctcctggcattgttccctggcaatatgaaagatttcttgta 19831054  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 8634598 - 8634566
Alignment:
Q  264 agaaaaatttggctcatttatttgatatttaac 296  Q
    ||||||| |||||||||||||||||||||||||    
T  8634598 agaaaaaattggctcatttatttgatatttaac 8634566  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 21530317 - 21530223
Alignment:
Q  169 tttgccaggggtttccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||||||||||| || |||||  ||||||||||||||||||  ||  |||||||||||| ||| |||||||| |||||  |||||||||||    
T  21530317 tttgccaggggtttccttggcatagtccctggcaaatttgccaggagttgatgctcctggcataatttcctggcaaaatgcaggatttcttgtag 21530223  T

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Target: scaffold0179 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 23800 - 23867
Alignment:
Q  173 ccaggggtttccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctg 240  Q
    |||||||  |||||| ||| |||||||||||||||||||||  ||||||||||||||||  |||||||    
T  23800 ccaggggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctggcatagttccctg 23867  T

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Target: scaffold0179; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 11315 - 11225
Alignment:
Q  173 ccaggggtttccctgccatagctcctggcaaatttgccagggattcttgctcctggcattattccctggcaatatgcaacatttcttgtag 263  Q
    |||||||  |||||| ||| ||||||||||||||||||| |  ||||||||||||||||  ||||||||| |  |||| | ||||||||||    
T  11315 ccaggggcatccctggcattgctcctggcaaatttgccaagagttcttgctcctggcatagttccctggctaattgcatcttttcttgtag 11225  T

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Target: scaffold0029 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 60481 - 60528
Alignment:
Q  166 caatttgccaggggtttccctgccatagctcctggcaaatttgccagg 213  Q
    |||||||||||||||||||||| |||  ||||| ||||||||||||||    
T  60481 caatttgccaggggtttccctggcattactcctagcaaatttgccagg 60528  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 17991 - 17943
Alignment:
Q  166 caatttgccaggggtttccctgccatagctcctggcaaatttgccaggg 214  Q
    ||||||| |||||||||||||| |||  ||||||||||||||| |||||    
T  17991 caatttgtcaggggtttccctggcattactcctggcaaatttgtcaggg 17943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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