View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17474_low_3 (Length: 593)

Name: NF17474_low_3
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17474_low_3
NF17474_low_3
[»] chr4 (4 HSPs)
chr4 (208-549)||(42332282-42332623)
chr4 (49-86)||(42333964-42334001)
chr4 (1-29)||(42334046-42334074)
chr4 (1-29)||(45112093-45112121)
[»] chr7 (3 HSPs)
chr7 (1-30)||(15238949-15238978)
chr7 (1-30)||(36469686-36469715)
chr7 (1-29)||(48674544-48674572)
[»] chr5 (2 HSPs)
chr5 (1-30)||(13958442-13958471)
chr5 (1-30)||(17545153-17545182)
[»] chr2 (2 HSPs)
chr2 (1-30)||(44857215-44857244)
chr2 (1-29)||(27297235-27297263)
[»] chr8 (2 HSPs)
chr8 (1-29)||(5326152-5326180)
chr8 (1-29)||(10200663-10200691)
[»] chr3 (1 HSPs)
chr3 (1-29)||(19591561-19591589)
[»] chr1 (2 HSPs)
chr1 (1-29)||(19924491-19924519)
chr1 (1-29)||(46965800-46965828)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 208 - 549
Target Start/End: Complemental strand, 42332623 - 42332282
Alignment:
Q  208 cctattatatatacaactaattaaaacagacaaaattttaaatgatgttattcgattaataagttgatgacggtcctgtcaaaaataaaatgaagttgtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42332623 cctattatatatacaactaattaaaacagacaaaattttaaatgatgttattcgattaataagttgatgacggtcctgtcaaaaataaaatgaagttgtt 42332524  T
Q  308 aattgagacttttatggtacttttatatatatccaaagttaattactaattattttgtacattcatctgtatttttctctttcaccaggttccaacctca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42332523 aattgagacttttatggtacttttatatatatccaaagttaattaataattattttgtacattcatctgtatttttctctttcaccaggttccaacctca 42332424  T
Q  408 atctcttaactctcccgattcattccactcttaactcaaatcgatcgagtgatccaacctctcaattttgttagcatttattatttatattaattattta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42332423 atctcttaactctcccgattcattccactcttaactcaaatcgatcgagtgatccaacctctcaattttgttagcatttattatttatattaattattta 42332324  T
Q  508 agtatgtaaactactcaattcatatttgatatgcagtgttta 549  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  42332323 agtaagtaaactactcaattcatatttgatatgcagtgttta 42332282  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 42334001 - 42333964
Alignment:
Q  49 catcccttaagaaaaagtacattaacaactcgtaaagt 86  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42334001 catcccttaagaaaaagtacattaacaactcgtaaagt 42333964  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 42334074 - 42334046
Alignment:
Q  1 aaccccggacactccacttctccataatt 29  Q
    |||||||||||||||||||||||||||||    
T  42334074 aaccccggacactccacttctccataatt 42334046  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45112121 - 45112093
Alignment:
Q  1 aaccccggacactccacttctccataatt 29  Q
    |||||||||||||||||||||||||||||    
T  45112121 aaccccggacactccacttctccataatt 45112093  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 15238949 - 15238978
Alignment:
Q  1 aaccccggacactccacttctccataattt 30  Q
    ||||||||||||||||||||||||||||||    
T  15238949 aaccccggacactccacttctccataattt 15238978  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 36469715 - 36469686
Alignment:
Q  1 aaccccggacactccacttctccataattt 30  Q
    ||||||||||||||||||||||||||||||    
T  36469715 aaccccggacactccacttctccataattt 36469686  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 48674572 - 48674544
Alignment:
Q  1 aaccccggacactccacttctccataatt 29  Q
    |||||||||||||||||||||||||||||    
T  48674572 aaccccggacactccacttctccataatt 48674544  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 13958442 - 13958471
Alignment:
Q  1 aaccccggacactccacttctccataattt 30  Q
    ||||||||||||||||||||||||||||||    
T  13958442 aaccccggacactccacttctccataattt 13958471  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 17545182 - 17545153
Alignment:
Q  1 aaccccggacactccacttctccataattt 30  Q
    ||||||||||||||||||||||||||||||    
T  17545182 aaccccggacactccacttctccataattt 17545153  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 44857244 - 44857215
Alignment:
Q  1 aaccccggacactccacttctccataattt 30  Q
    ||||||||||||||||||||||||||||||    
T  44857244 aaccccggacactccacttctccataattt 44857215  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27297235 - 27297263
Alignment:
Q  1 aaccccggacactccacttctccataatt 29  Q
    |||||||||||||||||||||||||||||    
T  27297235 aaccccggacactccacttctccataatt 27297263  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5326180 - 5326152
Alignment:
Q  1 aaccccggacactccacttctccataatt 29  Q
    |||||||||||||||||||||||||||||    
T  5326180 aaccccggacactccacttctccataatt 5326152  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10200691 - 10200663
Alignment:
Q  1 aaccccggacactccacttctccataatt 29  Q
    |||||||||||||||||||||||||||||    
T  10200691 aaccccggacactccacttctccataatt 10200663  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19591589 - 19591561
Alignment:
Q  1 aaccccggacactccacttctccataatt 29  Q
    |||||||||||||||||||||||||||||    
T  19591589 aaccccggacactccacttctccataatt 19591561  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19924491 - 19924519
Alignment:
Q  1 aaccccggacactccacttctccataatt 29  Q
    |||||||||||||||||||||||||||||    
T  19924491 aaccccggacactccacttctccataatt 19924519  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 46965800 - 46965828
Alignment:
Q  1 aaccccggacactccacttctccataatt 29  Q
    |||||||||||||||||||||||||||||    
T  46965800 aaccccggacactccacttctccataatt 46965828  T

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