View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_low_30 (Length: 295)
Name: NF17474_low_30
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 49844157 - 49843878
Alignment:
| Q |
1 |
ttcaatgttgaaccacagaaagagactgctttttaaagttgttgtctcctaagttcattattttttgtattctatgaatgaaccaagtaaagtaaagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49844157 |
ttcaatgttgaaccacagaaagagactgctttttaaagttgttgtctcctaagttcattattttttgtattctatgaatgaaccaagtaaagtaaagaaa |
49844058 |
T |
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| Q |
101 |
catcccccatatc-ttgaatcacttagctattgcattcagtttactgtgcattttttcaaatcttcaaagtctttgtatgaaaataaagaacacggtcaa |
199 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49844057 |
catcccccatatcattgaatcacatagctattgcattcagtttactgtgcattttttcaaatcttcaaagtctttgtatgaaaataaagaacacggtcaa |
49843958 |
T |
|
| Q |
200 |
aaacaatatttatcacaaagaaataaatgacttcatttaactcatgtagcaaactttgccaactgtcccagcttacttgt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49843957 |
aaacaatatttatcacaaagaaataaatgacttcatttaactcatgtagcaaactttgccaactgtcccagcttacttgt |
49843878 |
T |
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