View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_low_33 (Length: 288)
Name: NF17474_low_33
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 27762161 - 27762429
Alignment:
| Q |
1 |
aggacgttcatttgtatttcataaaatgtaaaagaaacaaaaggaaaatatgattttaccgaatctgaacaataggaaacttgttgctaagatattcttg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27762161 |
aggacgctcatttgtatttcataaaatgtaaaagaaacaaaaggaaaatatgattttaccgaatctgaacaataggaaacttgttgctaagatattcttg |
27762260 |
T |
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| Q |
101 |
gcattcttgtagatccaatgcaacgaatttnnnnnnntggtttcaatgacacacagtaatcctaagaccaaatgactccctaaagtcaaatttatagcaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27762261 |
gcattcttgtagatccaatgcaacgaatttaaaaaaatggtttcaatgacacacagtaatcctaagaccaaatgactccctaaagtcaaatttatagcaa |
27762360 |
T |
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| Q |
201 |
cnnnnnnntaataggactcgttttatgtcacgattttacttaacttaattgattaatgaatgacttagc |
269 |
Q |
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| T |
27762361 |
caaaaaaataataggactcgttttatgtcacaattttacttaacttaattgattaatgaatgacttagc |
27762429 |
T |
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