View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_low_34 (Length: 284)
Name: NF17474_low_34
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 39568457 - 39568184
Alignment:
| Q |
1 |
aatggatattcaattgatattttttgacaaaattataagggttgattctatatgactagagttttcttcggtgtccctcaataagaaatttaatgattac |
100 |
Q |
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| T |
39568457 |
aatggatattcaattgatattttttgacaaaattataagggttcattctatatgactagagttttcttcggtgtcactcaataagaaatttaatgattac |
39568358 |
T |
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| Q |
101 |
caaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcgtaagaactgattaagccattcaataattcagaaaagtacatgaaaa |
200 |
Q |
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| T |
39568357 |
caaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcgtaagaactgattaagccattcaataattcagaaaagtacatgaaaa |
39568258 |
T |
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| Q |
201 |
caacataatctttaagcctctaagaacaactttgtttgttatgaggaaaaaatttagaaacaaatttctgatga |
274 |
Q |
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| T |
39568257 |
cgacataatctttaagcctctaagaacaactttgtttgttatgaggaaaaaatttagaaacaaatttctgatga |
39568184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 39565640 - 39565514
Alignment:
| Q |
87 |
aatttaatgattaccaaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcg-------taagaactgattaagccattcaata |
179 |
Q |
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| T |
39565640 |
aatttaatgattaccaaa-atcagcttaataagaaatttaagtcacatcttctgtatgtcttattttgtaagaactaagaactgattaagccattcaata |
39565542 |
T |
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| Q |
180 |
attcagaaaagtacatgaaaacaacata |
207 |
Q |
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| T |
39565541 |
attcagaaaaatacttgaaaacaacata |
39565514 |
T |
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