View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17474_low_42 (Length: 249)

Name: NF17474_low_42
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17474_low_42
NF17474_low_42
[»] chr6 (1 HSPs)
chr6 (20-84)||(10578326-10578390)
[»] chr2 (2 HSPs)
chr2 (19-125)||(31267303-31267413)
chr2 (30-92)||(36658860-36658922)
[»] chr7 (2 HSPs)
chr7 (30-100)||(12120394-12120464)
chr7 (37-92)||(23773883-23773938)
[»] chr4 (4 HSPs)
chr4 (30-92)||(48666184-48666246)
chr4 (59-125)||(49420388-49420454)
chr4 (37-98)||(12579695-12579756)
chr4 (30-92)||(45892339-45892397)
[»] scaffold0219 (2 HSPs)
scaffold0219 (30-92)||(5558-5620)
scaffold0219 (47-92)||(2265-2310)
[»] scaffold0527 (2 HSPs)
scaffold0527 (47-92)||(2965-3010)
scaffold0527 (47-92)||(11028-11073)
[»] chr1 (1 HSPs)
chr1 (211-239)||(9005094-9005122)


Alignment Details
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 10578390 - 10578326
Alignment:
Q  20 tttagggttattctcttttattaccacttttgtattaaattgttgggttttgcttttgtggttta 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10578390 tttagggttattctcttttattaccacttttgtattaaattgttggattttgcttttgtggttta 10578326  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 31267303 - 31267413
Alignment:
Q  19 gtttagggttattctcttttattaccacttttgta-ttaa---attgttgggttttgcttttgtggtttactgggtcatgtccttgctccttagtcttgt 114  Q
    |||||||||| |||||||||||| ||||||||||| ||||   |||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||    
T  31267303 gtttagggttgttctcttttattgccacttttgtacttaatatattgttgggttttgctttagtggtttactgggtcaagtccttgctcctcaatcttgt 31267402  T
Q  115 atttccttctc 125  Q
    | || ||||||    
T  31267403 acttgcttctc 31267413  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 36658860 - 36658922
Alignment:
Q  30 ttctcttttattaccacttttgtattaaattgttgggttttgcttttgtggtttactgggtca 92  Q
    |||| ||||||||||| |||| |||| |||||||||||||| ||||||||||||||| |||||    
T  36658860 ttcttttttattaccatttttatattgaattgttgggttttacttttgtggtttactaggtca 36658922  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 12120394 - 12120464
Alignment:
Q  30 ttctcttttattaccacttttgtattaaattgttgggttttgcttttgtggtttactgggtcatgtccttg 100  Q
    |||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||| ||| |||||||    
T  12120394 ttctcttttattacaacttttatactaaattattgggttttgcttttgtggtttactggttcaggtccttg 12120464  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 23773883 - 23773938
Alignment:
Q  37 ttattaccacttttgtattaaattgttgggttttgcttttgtggtttactgggtca 92  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||||| |||||    
T  23773883 ttattaccctttttgtattaaattattgggttttgcttttgtggtttactaggtca 23773938  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 48666184 - 48666246
Alignment:
Q  30 ttctcttttattaccacttttgtattaaattgttgggttttgcttttgtggtttactgggtca 92  Q
    |||||||||||||| | ||||||| | |||||||| |||||||||||||||||||||||||||    
T  48666184 ttctcttttattacaatttttgtactgaattgttgagttttgcttttgtggtttactgggtca 48666246  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 49420454 - 49420388
Alignment:
Q  59 ttgttgggttttgcttttgtggtttactgggtcatgtccttgctccttagtcttgtatttccttctc 125  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||||| | |||| ||||| ||||||    
T  49420454 ttgttaggttttgcttttgtggtttaatgggtcaggtccttgctcctcaatcttatatttgcttctc 49420388  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 12579695 - 12579756
Alignment:
Q  37 ttattaccacttttgtattaaattgttgggttttgcttttgtggtttactgggtcatgtcct 98  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||| | ||||||| |||||    
T  12579695 ttattaccatttttgtaccaaattgttgggttttgcttttgtggttcattgggtcaggtcct 12579756  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 45892397 - 45892339
Alignment:
Q  30 ttctcttttattaccacttttgtattaaattgttgggttttgcttttgtggtttactgggtca 92  Q
    |||||||||||||||| ||||||| |    ||||| |||||||||||||||||||||||||||    
T  45892397 ttctcttttattaccatttttgtact----tgttgagttttgcttttgtggtttactgggtca 45892339  T

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Target: scaffold0219 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 5620 - 5558
Alignment:
Q  30 ttctcttttattaccacttttgtattaaattgttgggttttgcttttgtggtttactgggtca 92  Q
    |||||| |||||| || ||||||| | ||||||||||||||||||||||||||| | ||||||    
T  5620 ttctctattattatcatttttgtactgaattgttgggttttgcttttgtggttttcggggtca 5558  T

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Target: scaffold0219; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 2310 - 2265
Alignment:
Q  47 ttttgtattaaattgttgggttttgcttttgtggtttactgggtca 92  Q
    ||||||| | ||| ||||||||||||||||||||||||| ||||||    
T  2310 ttttgtactgaatagttgggttttgcttttgtggtttacggggtca 2265  T

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Target: scaffold0527 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 3010 - 2965
Alignment:
Q  47 ttttgtattaaattgttgggttttgcttttgtggtttactgggtca 92  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||||    
T  3010 ttttgtactgaattgtttggttttgcttttgtggtttactgggtca 2965  T

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Target: scaffold0527; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 11073 - 11028
Alignment:
Q  47 ttttgtattaaattgttgggttttgcttttgtggtttactgggtca 92  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||||    
T  11073 ttttgtactgaattgtttggttttgcttttgtggtttactgggtca 11028  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 9005094 - 9005122
Alignment:
Q  211 atgtatcaataataaatatttgtcctatg 239  Q
    |||||||||||||||||||||||||||||    
T  9005094 atgtatcaataataaatatttgtcctatg 9005122  T

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