View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_low_47 (Length: 237)
Name: NF17474_low_47
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9267932 - 9268150
Alignment:
| Q |
1 |
gttgctgttccacaacaacatgaatttcattgttcaacgatgccatcttgctctgtttctctgttgaannnnnnnngttgttgaaggaaatggaactgaa |
100 |
Q |
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| T |
9267932 |
gttgctgttccacaacaacatgaatttcattgttcaatgatgccatcttgctcagtttctctgttgaatttttgttgttgttgaaggaaatggaactgaa |
9268031 |
T |
|
| Q |
101 |
gtgcagtgcctgcaatgcaagtgtttttgtttccaaattgagagtatatttatatagtgctcctaatgatgtaagcaaagcgtgtgtgtgagcctctttg |
200 |
Q |
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|||| |||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
9268032 |
gtgctgtgcgtgcaaagcaagtgtttttgtttccaaattgagagtctatttgtagggtgctcctaatgatgtaagcaaagc--gtgcgtgagcctctttg |
9268129 |
T |
|
| Q |
201 |
gatgaaatcaaacactgatgg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
9268130 |
gatgaaatcaaacactgatgg |
9268150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 9263655 - 9263871
Alignment:
| Q |
4 |
gctgttccacaacaacatgaatttcattgttcaacgatgccatcttgctctgtttctctgttgaannnnnnnn-gttgttgaaggaaatggaactgaagt |
102 |
Q |
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| T |
9263655 |
gctgttccacaacaatctgaatttcattgttcaatgatgccatcttgcttagtttctctgttgattttttttttgttgttaaaggaaatggaactgaagt |
9263754 |
T |
|
| Q |
103 |
gcagtgcctgcaatgcaagtgtttttgtttccaaattgagagtatatttatatagtgctcctaatgatgtaagcaaagcgtgtgtgtgagcctctttgga |
202 |
Q |
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| T |
9263755 |
gcagtgcgtgcaatgcaagtgtttttgtttccaaattgagagtctatttatatagtgctcctaatgatgtaagcaaagc--gcgtgttagcctctttgga |
9263852 |
T |
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| Q |
203 |
tgaaatcaaacactgatgg |
221 |
Q |
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|||||||||||| |||||| |
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| T |
9263853 |
tgaaatcaaacattgatgg |
9263871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 9262969 - 9262785
Alignment:
| Q |
4 |
gctgttccacaacaacatgaatttcattgttcaacgatgccatcttgctctgtttctctgttgaannnnnnnngttgttgaaggaaatggaactgaagtg |
103 |
Q |
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||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||| |||||| |||||||||||||||||||| |
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| T |
9262969 |
gctgttccacaacaatctgaatttcattgttcaatgatgtcatcttgctcaatttctctgttgaattttttttgttgttaaaggaaatggaactgaagtg |
9262870 |
T |
|
| Q |
104 |
cagtgcctgcaatgcaagtgtttttgtttccaaattgagagtatatttatatagtgctcctaatgatgtaagcaaagcgtgtgtg |
188 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9262869 |
cagtgcgtgcaatgcaagtgtttttgtttccaaattgagagtctatttatatagtgctcctaatgatgtaagcaaagcgcgtgtg |
9262785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 9267503 - 9267318
Alignment:
| Q |
4 |
gctgttccacaacaacatgaatttcattgttcaacgatgccatcttgctctgtttctctgttgaannnnnnnn-gttgttgaaggaaatggaactgaagt |
102 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| |
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| T |
9267503 |
gctgttccacaacaatctgaatttcattgttcaatgatgccatcttgctcagtttctctgttgattttttttttgttgttaaaggaaatggaactgaagt |
9267404 |
T |
|
| Q |
103 |
gcagtgcctgcaatgcaagtgtttttgtttccaaattgagagtatatttatatagtgctcctaatgatgtaagcaaagcgtgtgtg |
188 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9267403 |
gcagtgcgtgcaatgcaagtgtttttgtttccaaattgagagtctatttatatagtgctcctaatgatgtaagcaaagcgcgtgtg |
9267318 |
T |
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