View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_low_49 (Length: 236)
Name: NF17474_low_49
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32934713 - 32934492
Alignment:
| Q |
1 |
aataccaataaaggcgaggttacaagtgtccatattaggaaaataaccacaattgttccaaagggtagtgctgcagtggagttataggcgacagcaaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32934713 |
aataccaataaaggcgaggttacaagtgtccatattaggaaaataaccacaattgttccaaagggtagtgctgcagtggagttataggcgacagcaaccg |
32934614 |
T |
|
| Q |
101 |
tgttaagaaagctgaatgtaaaaaataatggtccagagaatagactaccagttaacaccaaaattttcacctgaaatgcaacaaacaaatacttgataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32934613 |
tgttaagaaagctgaatgtaaaaaataatggtccagagaatagactaccagttaacaccaaaattttcacctgaaatgcaacaaacaaatacttgataag |
32934514 |
T |
|
| Q |
201 |
tgtaatccccttagttttttct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
32934513 |
tgtaatccccttagttttttct |
32934492 |
T |
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