View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_low_52 (Length: 215)
Name: NF17474_low_52
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 73 - 199
Target Start/End: Original strand, 41221451 - 41221578
Alignment:
| Q |
73 |
aaatatcaaatgacaatgttaaa-gatcaataatttctttatcaactttcgtcataagcttcttcacatcagacatttagcaacnnnnnnntcgatagca |
171 |
Q |
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| T |
41221451 |
aaatatcaaatgacaatgttaaaagatcaataatttctttatcaactttcgtcataagcttcttcacatcagacatttagcaacaaaaaaatcgatagca |
41221550 |
T |
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| Q |
172 |
tatttaaattcaatataacactgaaagg |
199 |
Q |
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| T |
41221551 |
tatttaaattcaatataacactgaaagg |
41221578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 41216284 - 41216346
Alignment:
| Q |
16 |
aaaatacaactcaaattccaatcaatcctatctatgatttacacttaacacgttaacaaatat |
78 |
Q |
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| T |
41216284 |
aaaatacaactcaaattccaatcaatcctatctatgatttacacttaatacgtaaacaaatat |
41216346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 21757335 - 21757220
Alignment:
| Q |
16 |
aaaatacaactcaaattccaatcaatcctatctatgatttacacttaacacgttaacaaatatcaaatgacaatgttaaagatcaataatttctttatca |
115 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| |
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| T |
21757335 |
aaaatacaactcaaattccaattaatcctttctatgatttacacttaacacgttaacaaatatcaaacgacaa--------aacaataatttctttatca |
21757244 |
T |
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| Q |
116 |
actttcgtcataagcttcttcaca |
139 |
Q |
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||||||| ||||| |||| ||||| |
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| T |
21757243 |
actttcgacataaacttcatcaca |
21757220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 25760855 - 25760919
Alignment:
| Q |
68 |
ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactttcgtcataagctt |
132 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |
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| T |
25760855 |
ttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttcagacataagctt |
25760919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 16706537 - 16706601
Alignment:
| Q |
68 |
ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactttcgtcataagctt |
132 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |
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| T |
16706537 |
ttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttcagacataagctt |
16706601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 21601414 - 21601350
Alignment:
| Q |
68 |
ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactttcgtcataagctt |
132 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |
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| T |
21601414 |
ttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttcagacataagctt |
21601350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 8797059 - 8797008
Alignment:
| Q |
68 |
ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactt |
119 |
Q |
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|||||||||||||||| |||| |||||||||||| ||||||||||||||| |
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| T |
8797059 |
ttaacaaatatcaaataacaactttaaagatcaatcgtttctttatcaactt |
8797008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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